C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000581373 RPL17-002 ENSG00000265681 9606 - 18:49488484-49492479 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015934 IEA large ribosomal subunit
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 647
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 604
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 387
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 350

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