C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: alanyl-tRNA synthetase domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000266967 AARSD1 9606 - 17:42950526-42964498 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000416949 AARSD1-015 42956414-42964479 processed_transcript
  ENST00000427569 AARSD1-001 42950546-42964476 protein_coding
  ENST00000430739 AARSD1-013 42955901-42964498 protein_coding
  ENST00000436545 AARSD1-017 42956405-42964454 nonsense_mediated_decay
  ENST00000441280 AARSD1-002 42955887-42964443 retained_intron
  ENST00000450475 AARSD1-014 42955855-42964482 nonsense_mediated_decay
  ENST00000474578 AARSD1-021 42950533-42955345 retained_intron
  ENST00000478040 AARSD1-022 42955274-42956539 retained_intron
  ENST00000483535 AARSD1-020 42954849-42955456 retained_intron
  ENST00000483774 AARSD1-018 42956028-42957532 retained_intron
  ENST00000486493 AARSD1-024 42950526-42955261 retained_intron
  ENST00000486664 AARSD1-023 42955090-42956525 retained_intron
  ENST00000491665 AARSD1-019 42955439-42956514 retained_intron
  ENST00000492036 AARSD1-012 42960942-42964466 retained_intron
  ENST00000587023 AARSD1-033 42950526-42952135 retained_intron
  ENST00000591096 AARSD1-030 42950526-42955946 nonsense_mediated_decay
  ENST00000591910 AARSD1-028 42955930-42964418 nonsense_mediated_decay
  ENST00000592136 AARSD1-029 42950526-42955034 retained_intron
  ENST00000593123 AARSD1-032 42950526-42954076 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000427569ENST00000430739ENST00000436545ENST00000441280ENST00000450475ENST00000492036ENST00000591096ENST00000592136
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000427569 13.114±0.00 27.786±0.00 0.271±0.00 12.371±8.04 10.926±9.45 12.882±0.00 4.722±3.70 14.550±0.00 6.592±0.00 3.979±2.00 18.737±0.00 21.319±11.71 10.160±2.16 54.091±0.42
ENST00000430739 N/A N/A 0.609±0.00 N/A N/A 2.079±0.00 N/A 1.148±0.00 3.690±0.74 6.558±0.00 N/A 56.076±0.00 6.679±0.00 70.308±0.00
ENST00000436545 N/A N/A N/A N/A 1.144±0.00 N/A 2.121±0.00 2.402±0.00 N/A 2.042±0.00 N/A N/A N/A N/A
ENST00000441280 N/A N/A N/A 9.947±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450475 N/A N/A 1.114±0.00 N/A N/A N/A N/A N/A N/A N/A 9.111±0.00 N/A N/A 57.466±0.00
ENST00000492036 N/A N/A N/A N/A N/A 3.195±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591096 N/A N/A N/A N/A N/A N/A N/A N/A 4.434±0.00 N/A N/A N/A N/A N/A
ENST00000592136 N/A N/A 0.929±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000447 CIL_000447_0001 CGP 17:42900797-42980528
CIL_00063V CIL_00063V_0001 CGP 17:42950526-42980528

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002161 IEA aminoacyl-tRNA editing activity
GO:0002196 IEA Ser-tRNA(Ala) hydrolase activity
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0004813 IEA alanine-tRNA ligase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006419 IEA alanyl-tRNA aminoacylation
GO:0006450 IEA regulation of translational fidelity
GO:0008150 ND biological_process
GO:0016876 IEA ligase activity, forming aminoacyl-tRNA and related compounds
GO:0043039 IEA tRNA aminoacylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015747 aarsd1 alanyl-tRNA synthetase domain containing 1 protein_coding Danio_rerio
ENSMUSG00000075528 Aarsd1 alanyl-tRNA synthetase domain containing 1 protein_coding Mus_musculus

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