C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alanyl-tRNA synthetase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427569 AARSD1-001 ENSG00000266967 9606 - 17:42950546-42964476 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000427569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000427569 13.114±0.00 27.786±0.00 0.271±0.00 12.371±8.04 10.926±9.45 12.882±0.00 4.722±3.70 14.550±0.00 6.592±0.00 3.979±2.00 18.737±0.00 21.319±11.71 10.160±2.16 54.091±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000447 CIL_000447_0001 CGP 17:42900797-42980528
CIL_00063V CIL_00063V_0001 CGP 17:42950526-42980528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002161 IEA aminoacyl-tRNA editing activity
GO:0002196 IEA Ser-tRNA(Ala) hydrolase activity
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0004813 IEA alanine-tRNA ligase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006419 IEA alanyl-tRNA aminoacylation
GO:0006450 IEA regulation of translational fidelity
GO:0008150 ND biological_process
GO:0016876 IEA ligase activity, forming aminoacyl-tRNA and related compounds
GO:0043039 IEA tRNA aminoacylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070395 Aarsd1-003 protein_coding Mus_musculus 0 1452
ENSMUST00000107259 Gm27029-001 protein_coding Mus_musculus 0 1419
ENSMUST00000107257 Gm27029-002 protein_coding Mus_musculus 0 1419
ENSMUST00000133240 Aarsd1-009 processed_transcript Mus_musculus 0 568
ENSMUST00000140123 Aarsd1-011 retained_intron Mus_musculus 0 412
ENSMUST00000189049 Aarsd1-012 retained_intron Mus_musculus 4.99983e-42 176

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