C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synovial sarcoma, X breakpoint 2B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000268447 SSX2B 9606 + X:52751132-52790305 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000288839 SSX2B-003 52755702-52761325 retained_intron
  ENST00000596480 SSX2B-002 52751241-52761535 protein_coding
  ENST00000612490 SSX2B-001 52751269-52761536 protein_coding
  ENST00000616191 SSX2B-201 52751132-52790305 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalTestisENST00000596480ENST00000616191
Transcript ID Adrenal Testis
ENST00000596480 0.011±0.00 N/A
ENST00000616191 N/A 0.103±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Y9 CIL_0000Y9_0005 CGP X:52644567-52790305

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS:IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000023165 Ssxb2 synovial sarcoma, X member B, breakpoint 2 protein_coding Mus_musculus
ENSMUSG00000035371 Ssx9 synovial sarcoma, X breakpoint 9 protein_coding Mus_musculus
ENSMUSG00000062814 Ssxa1 synovial sarcoma, X member A, breakpoint 1 protein_coding Mus_musculus
ENSMUSG00000068218 Ssxb9 synovial sarcoma, X member B, breakpoint 9 protein_coding Mus_musculus
ENSMUSG00000068219 Ssxb10 synovial sarcoma, X member B, breakpoint 10 protein_coding Mus_musculus
ENSMUSG00000071816 Ssxb5 synovial sarcoma, X member B, breakpoint 5 protein_coding Mus_musculus
ENSMUSG00000079697 Gm5751 predicted gene 5751 protein_coding Mus_musculus
ENSMUSG00000079699 Gm6592 predicted gene 6592 protein_coding Mus_musculus
ENSMUSG00000079701 Ssxb3 synovial sarcoma, X member B, breakpoint 3 protein_coding Mus_musculus
ENSMUSG00000079702 Ssxb6 synovial sarcoma, X member B, breakpoint 6 protein_coding Mus_musculus
ENSMUSG00000079703 Ssxb8 synovial sarcoma, X member B, breakpoint 8 protein_coding Mus_musculus
ENSMUSG00000079704 Gm14459 predicted gene 14459 protein_coding Mus_musculus
ENSMUSG00000079705 Ssxb1 synovial sarcoma, X member B, breakpoint 1 protein_coding Mus_musculus
ENSMUSG00000095316 Gm21876 predicted gene, 21876 protein_coding Mus_musculus

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