C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000305 Cdh4 10090 + 2:179442431-179899373 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000314 Cdh4-001 179442431-179899373 protein_coding
  ENSMUST00000098996 Cdh4-201 179893909-179894693 protein_coding
  ENSMUST00000108911 Cdh4-002 179442622-179847704 protein_coding
  ENSMUST00000124708 Cdh4-003 179444233-179780319 processed_transcript
  ENSMUST00000129659 Cdh4-005 179893884-179896149 retained_intron
  ENSMUST00000136411 Cdh4-004 179777163-179797511 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000314ENSMUST00000108911ENSMUST00000129659ENSMUST00000136411
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000314 0.648±0.62 1.240±0.43 1.631±0.19 11.629±7.19 0.306±0.08 0.154±0.05 0.246±0.12 0.489±0.11 0.097±0.03 0.759±0.23 1.807±0.87 0.878±0.28 0.317±0.11 0.066±0.04
ENSMUST00000108911 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.127±0.00
ENSMUST00000129659 N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A N/A N/A
ENSMUST00000136411 0.117±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000693 CIL_000693_0003 CGP 2:179442431-179976646

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0007156 IDA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 IDA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007411 IDA axon guidance
GO:0008150 ND biological_process
GO:0045773 IDA positive regulation of axon extension

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015002 cdh4 cadherin 4, retinal protein_coding Danio_rerio
ENSG00000179242 CDH4 cadherin 4, type 1, R-cadherin (retinal) protein_coding Homo_sapiens

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