C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 4, type 1, R-cadherin (retinal)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179242 CDH4 9606 + 20:61252426-61940617 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000543233 CDH4-003 61599761-61937249 protein_coding
  ENST00000611855 CDH4-002 61570135-61937218 protein_coding
  ENST00000614565 CDH4-001 61252426-61940617 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisENST00000543233ENST00000611855ENST00000614565
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENST00000543233 N/A N/A N/A N/A 0.009±0.00 N/A N/A 0.020±0.00 N/A 0.154±0.01 N/A N/A
ENST00000611855 N/A N/A N/A 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614565 0.020±0.00 0.051±0.00 2.000±1.73 0.059±0.00 0.027±0.00 0.032±0.01 0.060±0.00 N/A 0.286±0.00 0.143±0.10 0.144±0.08 0.377±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000693 CIL_000693_0002 CGP 20:61252426-62065810

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 IEA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007411 IEA axon guidance
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization
GO:0045773 IEA positive regulation of axon extension

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015002 cdh4 cadherin 4, retinal protein_coding Danio_rerio
ENSMUSG00000000305 Cdh4 cadherin 4 protein_coding Mus_musculus

Loading