C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000314 Cdh4-001 ENSMUSG00000000305 10090 + 2:179442431-179899373 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000314
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000314 0.648±0.62 1.240±0.43 1.631±0.19 11.629±7.19 0.306±0.08 0.154±0.05 0.246±0.12 0.489±0.11 0.097±0.03 0.759±0.23 1.807±0.87 0.878±0.28 0.317±0.11 0.066±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000693 CIL_000693_0003 CGP 2:179442431-179976646

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0007156 IDA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 IDA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007411 IDA axon guidance
GO:0045773 IDA positive regulation of axon extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000543233 CDH4-003 protein_coding Homo_sapiens 0 2601
ENST00000611855 CDH4-002 protein_coding Homo_sapiens 0 2442
ENST00000614565 CDH4-001 protein_coding Homo_sapiens 0 2728

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