C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 26, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001225 Slc26a3 10090 + 12:31390871-31473917 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001254 Slc26a3-001 31438219-31473917 protein_coding
  ENSMUST00000109275 Slc26a3-007 31470872-31471823 protein_coding
  ENSMUST00000110854 Slc26a3-003 31438219-31452864 nonsense_mediated_decay
  ENSMUST00000165816 Slc26a3-004 31447435-31455079 retained_intron
  ENSMUST00000167432 Slc26a3-005 31390871-31450972 protein_coding
  ENSMUST00000168209 Slc26a3-002 31438233-31452890 retained_intron
  ENSMUST00000171616 Slc26a3-006 31438217-31473495 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000001254ENSMUST00000109275ENSMUST00000110854ENSMUST00000165816ENSMUST00000167432ENSMUST00000168209ENSMUST00000171616
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000001254 N/A N/A 0.040±0.00 0.018±0.00 N/A 111.874±17.89 0.397±0.15 0.037±0.02 0.029±0.02 0.650±0.08 0.047±0.02 0.113±0.06 0.064±0.06
ENSMUST00000109275 N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A 0.009±0.00 N/A 0.323±0.00 N/A N/A
ENSMUST00000110854 0.030±0.00 0.242±0.00 N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A 0.042±0.00 N/A
ENSMUST00000165816 0.021±0.01 0.026±0.00 0.035±0.00 0.004±0.00 N/A 30.957±5.06 0.164±0.05 0.027±0.02 0.031±0.02 N/A 0.031±0.01 0.009±0.00 0.023±0.01
ENSMUST00000167432 0.050±0.01 0.508±0.00 N/A N/A N/A 57.391±0.00 N/A 0.040±0.00 0.025±0.00 0.158±0.12 0.183±0.03 0.065±0.00 0.093±0.06
ENSMUST00000168209 N/A N/A N/A N/A N/A N/A 0.201±0.00 0.143±0.00 N/A 0.273±0.03 N/A N/A 0.171±0.00
ENSMUST00000171616 N/A N/A N/A 0.032±0.00 0.018±0.00 N/A 0.194±0.00 N/A N/A N/A 0.137±0.00 0.010±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZV CIL_0008ZV_0002 VISTA 12:31009963-31611477
CIL_0001G3 CIL_0001G3_0002 CGP 12:31390871-31499616

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0006820 IDA anion transport
GO:0006821 IMP chloride transport
GO:0008271 IEA secondary active sulfate transmembrane transporter activity
GO:0015106 IMP bicarbonate transmembrane transporter activity
GO:0015108 IMP chloride transmembrane transporter activity
GO:0015301 IDA anion:anion antiporter activity
GO:0015701 IMP bicarbonate transport
GO:0016020 IDA membrane
GO:0016324 IEA apical plasma membrane
GO:0031526 IEA brush border membrane
GO:0048240 IMP sperm capacitation
GO:0051454 IMP intracellular pH elevation
GO:0060081 IMP membrane hyperpolarization
GO:0071320 IDA cellular response to cAMP
GO:0097225 IDA sperm midpiece
GO:1902358 IEA sulfate transmembrane transport
GO:1902476 IMP chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003615 SLC26A3 (1 of 2) solute carrier family 26 (anion exchanger), member 3 protein_coding Danio_rerio
ENSDARG00000007371 slc26a3 solute carrier family 26, member 3 protein_coding Danio_rerio
ENSG00000091138 SLC26A3 solute carrier family 26 (anion exchanger), member 3 protein_coding Homo_sapiens

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