C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 26, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001254 Slc26a3-001 ENSMUSG00000001225 10090 + 12:31438219-31473917 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000001254
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000001254 0.040±0.00 0.018±0.00 111.874±17.89 0.397±0.15 0.037±0.02 0.029±0.02 0.650±0.08 0.047±0.02 0.113±0.06 0.064±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZV CIL_0008ZV_0002 VISTA 12:31009963-31611477
CIL_0001G3 CIL_0001G3_0002 CGP 12:31390871-31499616

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0006820 IDA anion transport
GO:0006821 IMP chloride transport
GO:0008271 IEA secondary active sulfate transmembrane transporter activity
GO:0015106 IMP bicarbonate transmembrane transporter activity
GO:0015108 IMP chloride transmembrane transporter activity
GO:0015301 IDA anion:anion antiporter activity
GO:0015701 IMP bicarbonate transport
GO:0016020 IDA membrane
GO:0016324 IEA apical plasma membrane
GO:0031526 IEA brush border membrane
GO:0048240 IMP sperm capacitation
GO:0051454 IMP intracellular pH elevation
GO:0060081 IMP membrane hyperpolarization
GO:0071320 IDA cellular response to cAMP
GO:0097225 IDA sperm midpiece
GO:1902358 IEA sulfate transmembrane transport
GO:1902476 IMP chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340010 SLC26A3-002 protein_coding Homo_sapiens 0 1938
ENST00000379083 SLC26A3-001 nonsense_mediated_decay Homo_sapiens 0 1186
ENST00000453332 SLC26A3-003 protein_coding Homo_sapiens 0 363

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