C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167662 Ergic1-001 ENSMUSG00000001576 10090 + 17:26561489-26656931 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167662
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167662 108.238±5.98 87.336±7.60 40.874±14.23 28.566±16.50 73.174±12.62 90.457±10.43 22.204±3.42 51.688±8.28 35.163±13.92 49.715±4.79 12.500±0.88 84.313±33.43 13.666±10.40 11.975±6.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0002 VISTA 17:26208852-26810691
CIL_000915 CIL_000915_0002 VISTA 17:26527896-27128643

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005793 IEA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393784 ERGIC1-002 protein_coding Homo_sapiens 0 1369
ENST00000519796 ERGIC1-012 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000519860 ERGIC1-006 processed_transcript Homo_sapiens 0 357
ENST00000520326 ERGIC1-009 protein_coding Homo_sapiens 0 632
ENST00000520642 ERGIC1-010 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000521392 ERGIC1-011 processed_transcript Homo_sapiens 0 329
ENST00000523291 ERGIC1-013 protein_coding Homo_sapiens 0 529
ENST00000523366 ERGIC1-014 processed_transcript Homo_sapiens 1e-19 100
ENST00000523650 ERGIC1-015 processed_transcript Homo_sapiens 0 372

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