C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ClpB caseinolytic peptidase B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001829 Clpb 10090 + 7:101663633-101790168 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001884 Clpb-001 101663633-101790168 protein_coding
  ENSMUST00000106998 Clpb-003 101663705-101787810 protein_coding
  ENSMUST00000123870 Clpb-007 101663775-101706547 nonsense_mediated_decay
  ENSMUST00000136193 Clpb-010 101763579-101769386 processed_transcript
  ENSMUST00000137214 Clpb-002 101663633-101722922 retained_intron
  ENSMUST00000142803 Clpb-004 101663757-101688949 retained_intron
  ENSMUST00000147439 Clpb-008 101682116-101763695 protein_coding
  ENSMUST00000150355 Clpb-006 101663776-101786890 retained_intron
  ENSMUST00000150832 Clpb-011 101763606-101785635 processed_transcript
  ENSMUST00000153473 Clpb-009 101683197-101751322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001884ENSMUST00000106998ENSMUST00000123870ENSMUST00000137214ENSMUST00000153473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001884 3.471±0.58 7.328±0.84 N/A 3.419±1.37 4.452±0.35 2.537±0.26 4.858±0.66 3.861±0.52 1.196±0.47 1.915±0.46 3.296±0.88 5.767±2.32 1.738±0.30 N/A
ENSMUST00000106998 11.733±7.19 15.563±2.04 5.615±3.31 15.620±0.00 11.155±1.64 6.393±1.40 14.462±3.24 16.901±5.44 9.422±5.68 4.061±0.84 8.206±1.75 12.092±3.03 15.751±9.10 223.771±5.32
ENSMUST00000123870 N/A 16.712±2.48 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 133.855±14.89
ENSMUST00000153473 N/A N/A N/A N/A N/A N/A N/A N/A 15.992±5.05 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XL CIL_0008XL_0002 VISTA 7:101413526-102014552

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0034605 IEA cellular response to heat

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088463 CLPB ClpB caseinolytic peptidase B homolog (E. coli) protein_coding Danio_rerio
ENSG00000162129 CLPB ClpB caseinolytic peptidase B homolog (E. coli) protein_coding Homo_sapiens

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