C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intraflagellar transport 46
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002031 Ift46 10090 + 9:44767908-44792714 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002099 Ift46-001 44772935-44792714 protein_coding
  ENSMUST00000118186 Ift46-002 44776377-44790895 protein_coding
  ENSMUST00000124534 Ift46-004 44773054-44774415 processed_transcript
  ENSMUST00000125877 Ift46-006 44773100-44784049 protein_coding
  ENSMUST00000128150 Ift46-009 44772960-44782137 protein_coding
  ENSMUST00000133167 Ift46-010 44777942-44782207 retained_intron
  ENSMUST00000142586 Ift46-012 44784303-44787565 processed_transcript
  ENSMUST00000143654 Ift46-011 44773051-44786325 processed_transcript
  ENSMUST00000147559 Ift46-007 44773263-44782129 protein_coding
  ENSMUST00000149020 Ift46-013 44789444-44790736 retained_intron
  ENSMUST00000151905 Ift46-008 44773700-44782198 protein_coding
  ENSMUST00000154090 Ift46-003 44767908-44782233 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002099ENSMUST00000118186ENSMUST00000125877ENSMUST00000128150ENSMUST00000133167ENSMUST00000143654ENSMUST00000147559ENSMUST00000149020ENSMUST00000151905ENSMUST00000154090
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002099 2.597±0.31 1.528±0.25 2.361±0.26 3.676±0.08 1.787±0.58 1.648±0.38 0.926±0.09 1.955±0.21 1.154±0.24 1.802±0.17 0.482±0.10 2.495±0.34 N/A N/A
ENSMUST00000118186 22.978±2.10 10.637±1.36 21.743±0.87 30.626±7.95 16.648±2.95 15.723±2.86 7.243±2.22 19.183±0.71 10.684±3.03 20.288±1.79 5.590±1.06 24.411±3.64 25.440±7.86 55.534±21.52
ENSMUST00000125877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.866±0.00 N/A
ENSMUST00000128150 N/A N/A N/A 32.894±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.593±0.00
ENSMUST00000133167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.710±0.00 N/A N/A N/A
ENSMUST00000143654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.133±0.00 N/A
ENSMUST00000147559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 72.104±0.00 215.744±0.00
ENSMUST00000149020 N/A 3.458±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 123.470±0.00 N/A N/A
ENSMUST00000154090 13.549±0.00 N/A 13.327±1.35 16.147±1.42 N/A N/A 4.863±0.41 N/A 6.262±0.38 14.511±2.39 3.071±0.66 N/A 14.878±1.40 30.114±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081E CIL_00081E_0002 VISTA 9:44577224-45180192

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005929 IDA cilium
GO:0007224 IMP smoothened signaling pathway
GO:0015031 ISO protein transport
GO:0030992 IDA intraciliary transport particle B
GO:0031512 IDA motile primary cilium
GO:0031514 ISO motile cilium
GO:0031647 ISO regulation of protein stability
GO:0035082 ISO axoneme assembly
GO:0042073 IBA intraciliary transport
GO:0042384 IMP cilium assembly
GO:0044782 ISO cilium organization
GO:0060170 ISO ciliary membrane
GO:0060285 ISO cilium-dependent cell motility
GO:0072372 IDA primary cilium
GO:0097546 ISO ciliary base
GO:1902017 ISO regulation of cilium assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011240 ift46 intraflagellar transport protein 46 protein_coding Danio_rerio
ENSG00000118096 IFT46 intraflagellar transport 46 protein_coding Homo_sapiens

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