C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 46
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118186 Ift46-002 ENSMUSG00000002031 10090 + 9:44776377-44790895 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118186
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118186 22.978±2.10 10.637±1.36 21.743±0.87 30.626±7.95 16.648±2.95 15.723±2.86 7.243±2.22 19.183±0.71 10.684±3.03 20.288±1.79 5.590±1.06 24.411±3.64 25.440±7.86 55.534±21.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081E CIL_00081E_0002 VISTA 9:44577224-45180192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005813 IDA centrosome
GO:0005929 IDA cilium
GO:0007224 IMP smoothened signaling pathway
GO:0015031 ISO protein transport
GO:0030992 IDA intraciliary transport particle B
GO:0031512 IDA motile primary cilium
GO:0031514 ISO motile cilium
GO:0031647 ISO regulation of protein stability
GO:0035082 ISO axoneme assembly
GO:0042073 IBA intraciliary transport
GO:0042384 IMP cilium assembly
GO:0044782 ISO cilium organization
GO:0060170 ISO ciliary membrane
GO:0060285 ISO cilium-dependent cell motility
GO:0072372 IDA primary cilium
GO:0097546 ISO ciliary base
GO:1902017 ISO regulation of cilium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264020 IFT46-013 protein_coding Homo_sapiens 0 950
ENST00000264021 IFT46-001 protein_coding Homo_sapiens 0 998
ENST00000525060 IFT46-011 retained_intron Homo_sapiens 0 628
ENST00000530872 IFT46-002 protein_coding Homo_sapiens 0 780
ENST00000531201 IFT46-010 retained_intron Homo_sapiens 0 948
ENST00000531939 IFT46-009 protein_coding Homo_sapiens 0 634
ENST00000534156 IFT46-006 protein_coding Homo_sapiens 0 628

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