C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane 9 superfamily member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002320 Tm9sf1 10090 - 14:55635965-55643806 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002391 Tm9sf1-002 55636060-55643340 protein_coding
  ENSMUST00000120041 Tm9sf1-004 55635965-55643251 protein_coding
  ENSMUST00000121791 Tm9sf1-008 55636012-55643354 protein_coding
  ENSMUST00000121937 Tm9sf1-003 55635968-55643315 protein_coding
  ENSMUST00000122358 Tm9sf1-001 55635965-55643806 protein_coding
  ENSMUST00000127473 Tm9sf1-006 55640096-55643371 retained_intron
  ENSMUST00000130167 Tm9sf1-013 55638301-55641060 processed_transcript
  ENSMUST00000132338 Tm9sf1-007 55637833-55643523 protein_coding
  ENSMUST00000133707 Tm9sf1-011 55642584-55643333 protein_coding
  ENSMUST00000138085 Tm9sf1-009 55641418-55643771 protein_coding
  ENSMUST00000139313 Tm9sf1-010 55640385-55643560 processed_transcript
  ENSMUST00000146588 Tm9sf1-012 55640444-55641599 retained_intron
  ENSMUST00000149726 Tm9sf1-005 55636016-55643361 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000002391ENSMUST00000120041ENSMUST00000121791
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000002391 29.055±9.31 75.561±6.60 13.854±0.85 9.899±0.00 31.430±12.16 66.920±4.78 10.262±1.16 23.427±3.40 20.597±3.38 27.186±3.76 7.200±1.43 52.968±19.22 21.357±7.97
ENSMUST00000120041 15.474±0.01 N/A 9.783±0.55 N/A 21.500±1.73 19.612±0.00 12.977±2.67 28.863±2.00 13.459±3.12 22.826±2.82 N/A 16.914±4.26 15.404±3.00
ENSMUST00000121791 N/A N/A N/A N/A N/A N/A N/A N/A 16.295±0.88 N/A N/A 16.299±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028R CIL_00028R_0002 CGP 14:55618037-55637895
CIL_00029E CIL_00029E_0002 CGP 14:55635965-55652539

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005764 IEA lysosome
GO:0006914 IEA autophagy
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022970 tm9sf1 transmembrane 9 superfamily member 1 protein_coding Danio_rerio
ENSG00000100926 TM9SF1 transmembrane 9 superfamily member 1 protein_coding Homo_sapiens
ENSG00000254692 TM9SF1 transmembrane 9 superfamily member 1 protein_coding Homo_sapiens

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