Institute of Cardiovascular Regeneration Webtool Repository

Notice (8): Undefined index: CIL_00028R_0001 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_00028R_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000100918' => 'REC8 meiotic recombination protein',
		'ENSG00000196497' => 'importin 4',
		'ENSG00000259522' => null,
		'ENSMUSG00000002319' => 'importin 4',
		'ENSMUSG00000002320' => 'transmembrane 9 superfamily member 1',
		'ENSMUSG00000002324' => 'REC8 meiotic recombination protein'
	),
	'gene_name_arr' => array(
		'ENSG00000100918' => 'REC8',
		'ENSG00000196497' => 'IPO4',
		'ENSG00000259522' => 'RP11-468E2.2',
		'ENSMUSG00000002319' => 'Ipo4',
		'ENSMUSG00000002320' => 'Tm9sf1',
		'ENSMUSG00000002324' => 'Rec8'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 8 => 'Bladder',
		(int) 12 => 'Brain',
		(int) 17 => 'Breast',
		(int) 24 => 'Colon',
		(int) 28 => 'Heart',
		(int) 34 => 'Kidney',
		(int) 39 => 'Liver',
		(int) 46 => 'Lung',
		(int) 50 => 'Muscle',
		(int) 59 => 'Ovary',
		(int) 67 => 'Placenta',
		(int) 73 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 64,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000557806' => array(
			'start' => '24172015',
			'end' => '24172996',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'REC8-011'
		),
		'ENST00000558191' => array(
			'start' => '24178183',
			'end' => '24179688',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-008'
		),
		'ENST00000558381' => array(
			'start' => '24179528',
			'end' => '24180035',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-006'
		),
		'ENST00000559797' => array(
			'start' => '24178126',
			'end' => '24180254',
			'transcript_biotype' => 'non_stop_decay',
			'transcript_name' => 'REC8-007'
		),
		'ENST00000559939' => array(
			'start' => '24179436',
			'end' => '24180253',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'REC8-013'
		),
		'ENST00000560032' => array(
			'start' => '24172282',
			'end' => '24173163',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-004'
		),
		'ENST00000560501' => array(
			'start' => '24172611',
			'end' => '24176884',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'REC8-012'
		),
		'ENST00000560823' => array(
			'start' => '24177510',
			'end' => '24178100',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-009'
		),
		'ENST00000611366' => array(
			'start' => '24172025',
			'end' => '24180254',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'REC8-002'
		),
		'ENST00000619111' => array(
			'start' => '24175318',
			'end' => '24177918',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-005'
		),
		'ENST00000619284' => array(
			'start' => '24172749',
			'end' => '24177750',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-010'
		),
		'ENST00000619469' => array(
			'start' => '24172135',
			'end' => '24180254',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-003'
		),
		'ENST00000620473' => array(
			'start' => '24171853',
			'end' => '24180257',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'REC8-001'
		),
		'ENST00000354464' => array(
			'start' => '24180219',
			'end' => '24188964',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IPO4-001'
		),
		'ENST00000557996' => array(
			'start' => '24188102',
			'end' => '24188797',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-023'
		),
		'ENST00000558046' => array(
			'start' => '24180226',
			'end' => '24188797',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'IPO4-009'
		),
		'ENST00000558193' => array(
			'start' => '24187553',
			'end' => '24188821',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-021'
		),
		'ENST00000558233' => array(
			'start' => '24180364',
			'end' => '24183272',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IPO4-013'
		),
		'ENST00000558718' => array(
			'start' => '24187531',
			'end' => '24188797',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-016'
		),
		'ENST00000558780' => array(
			'start' => '24180220',
			'end' => '24188822',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'IPO4-004'
		),
		'ENST00000559253' => array(
			'start' => '24187087',
			'end' => '24188844',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'IPO4-018'
		),
		'ENST00000559588' => array(
			'start' => '24180305',
			'end' => '24188869',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-002'
		),
		'ENST00000559635' => array(
			'start' => '24187491',
			'end' => '24188069',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-017'
		),
		'ENST00000560155' => array(
			'start' => '24180305',
			'end' => '24188869',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'IPO4-003'
		),
		'ENST00000560222' => array(
			'start' => '24188159',
			'end' => '24188811',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-022'
		),
		'ENST00000560315' => array(
			'start' => '24187946',
			'end' => '24188797',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-020'
		),
		'ENST00000560798' => array(
			'start' => '24180220',
			'end' => '24188797',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-011'
		),
		'ENST00000560935' => array(
			'start' => '24182817',
			'end' => '24183650',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-015'
		),
		'ENST00000561034' => array(
			'start' => '24188005',
			'end' => '24188822',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'IPO4-019'
		),
		'ENST00000561090' => array(
			'start' => '24180219',
			'end' => '24188822',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-010'
		),
		'ENST00000561199' => array(
			'start' => '24180442',
			'end' => '24188797',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-008'
		),
		'ENST00000561379' => array(
			'start' => '24182536',
			'end' => '24183472',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-014'
		),
		'ENST00000561462' => array(
			'start' => '24180220',
			'end' => '24184675',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IPO4-012'
		),
		'ENST00000561419' => array(
			'start' => '24180395',
			'end' => '24190416',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'RP11-468E2.2-001'
		),
		'ENSMUST00000047131' => array(
			'start' => '55625400',
			'end' => '55635684',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ipo4-001'
		),
		'ENSMUST00000125133' => array(
			'start' => '55634048',
			'end' => '55635569',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-004'
		),
		'ENSMUST00000126064' => array(
			'start' => '55627298',
			'end' => '55627924',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-008'
		),
		'ENSMUST00000127773' => array(
			'start' => '55628783',
			'end' => '55630660',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-007'
		),
		'ENSMUST00000135221' => array(
			'start' => '55625740',
			'end' => '55635957',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Ipo4-002'
		),
		'ENSMUST00000141499' => array(
			'start' => '55625724',
			'end' => '55627390',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-010'
		),
		'ENSMUST00000141848' => array(
			'start' => '55625716',
			'end' => '55626432',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-011'
		),
		'ENSMUST00000146528' => array(
			'start' => '55625722',
			'end' => '55626417',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Ipo4-012'
		),
		'ENSMUST00000148351' => array(
			'start' => '55625634',
			'end' => '55635631',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Ipo4-003'
		),
		'ENSMUST00000148942' => array(
			'start' => '55633757',
			'end' => '55635210',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-005'
		),
		'ENSMUST00000150951' => array(
			'start' => '55632928',
			'end' => '55633658',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-006'
		),
		'ENSMUST00000155464' => array(
			'start' => '55625719',
			'end' => '55627563',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Ipo4-009'
		),
		'ENSMUST00000156420' => array(
			'start' => '55625896',
			'end' => '55637895',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Ipo4-013'
		),
		'ENSMUST00000002391' => array(
			'start' => '55636060',
			'end' => '55643340',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-002'
		),
		'ENSMUST00000120041' => array(
			'start' => '55635965',
			'end' => '55643251',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-004'
		),
		'ENSMUST00000121791' => array(
			'start' => '55636012',
			'end' => '55643354',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-008'
		),
		'ENSMUST00000121937' => array(
			'start' => '55635968',
			'end' => '55643315',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-003'
		),
		'ENSMUST00000122358' => array(
			'start' => '55635965',
			'end' => '55643806',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-001'
		),
		'ENSMUST00000127473' => array(
			'start' => '55640096',
			'end' => '55643371',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Tm9sf1-006'
		),
		'ENSMUST00000130167' => array(
			'start' => '55638301',
			'end' => '55641060',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tm9sf1-013'
		),
		'ENSMUST00000132338' => array(
			'start' => '55637833',
			'end' => '55643523',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-007'
		),
		'ENSMUST00000133707' => array(
			'start' => '55642584',
			'end' => '55643333',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-011'
		),
		'ENSMUST00000138085' => array(
			'start' => '55641418',
			'end' => '55643771',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-009'
		),
		'ENSMUST00000139313' => array(
			'start' => '55640385',
			'end' => '55643560',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tm9sf1-010'
		),
		'ENSMUST00000146588' => array(
			'start' => '55640444',
			'end' => '55641599',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Tm9sf1-012'
		),
		'ENSMUST00000149726' => array(
			'start' => '55636016',
			'end' => '55643361',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Tm9sf1-005'
		),
		'ENSMUST00000002395' => array(
			'start' => '55618037',
			'end' => '55625395',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rec8-001'
		),
		'ENSMUST00000140335' => array(
			'start' => '55618183',
			'end' => '55618816',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rec8-002'
		),
		'ENSMUST00000141425' => array(
			'start' => '55623569',
			'end' => '55624510',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rec8-003'
		),
		'ENSMUST00000155193' => array(
			'start' => '55624919',
			'end' => '55625395',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rec8-004'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_00028R_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_00028R_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000002319' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000002320' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000002324' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Brain',
			(int) 16 => 'Testis',
			(int) 17 => 'Muscle',
			(int) 18 => 'Muscle',
			(int) 19 => 'Ovary',
			(int) 20 => 'Placenta',
			(int) 21 => 'Breast',
			(int) 22 => 'Heart',
			(int) 23 => 'Kidney',
			(int) 24 => 'Liver',
			(int) 25 => 'Ovary',
			(int) 26 => 'Placenta',
			(int) 27 => 'Testis',
			(int) 28 => 'Adipose',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Bladder',
			(int) 31 => 'Brain',
			(int) 32 => 'Breast',
			(int) 33 => 'Colon',
			(int) 34 => 'Heart',
			(int) 35 => 'Kidney',
			(int) 36 => 'Liver',
			(int) 37 => 'Lung',
			(int) 38 => 'Muscle',
			(int) 39 => 'Ovary',
			(int) 40 => 'Placenta',
			(int) 41 => 'Adipose',
			(int) 42 => 'Bladder',
			(int) 43 => 'Breast',
			(int) 44 => 'Colon',
			(int) 45 => 'Heart',
			(int) 46 => 'Kidney',
			(int) 47 => 'Liver',
			(int) 48 => 'Lung',
			(int) 49 => 'Ovary',
			(int) 50 => 'Placenta',
			(int) 51 => 'Liver',
			(int) 52 => 'Ovary',
			(int) 53 => 'Adipose',
			(int) 54 => 'Adrenal',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Colon',
			(int) 59 => 'Heart',
			(int) 60 => 'Kidney',
			(int) 61 => 'Liver',
			(int) 62 => 'Lung',
			(int) 63 => 'Muscle',
			(int) 64 => 'Ovary',
			(int) 65 => 'Placenta',
			(int) 66 => 'Testis',
			(int) 67 => 'Breast',
			(int) 68 => 'Muscle',
			(int) 69 => 'Brain',
			(int) 70 => 'Heart',
			(int) 71 => 'Ovary',
			(int) 72 => 'Testis',
			(int) 73 => 'Breast',
			(int) 74 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000100918' => 'REC8 meiotic recombination protein',
	'ENSG00000196497' => 'importin 4',
	'ENSG00000259522' => null,
	'ENSMUSG00000002319' => 'importin 4',
	'ENSMUSG00000002320' => 'transmembrane 9 superfamily member 1',
	'ENSMUSG00000002324' => 'REC8 meiotic recombination protein'
)
$gene_name_arr = array(
	'ENSG00000100918' => 'REC8',
	'ENSG00000196497' => 'IPO4',
	'ENSG00000259522' => 'RP11-468E2.2',
	'ENSMUSG00000002319' => 'Ipo4',
	'ENSMUSG00000002320' => 'Tm9sf1',
	'ENSMUSG00000002324' => 'Rec8'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00028R_0001',
			'tax_id' => '9606',
			'chromosome' => '14',
			'seq_start' => '24171853',
			'seq_end' => '24188964',
			'region_length' => '17111',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000100918-ENSG00000196497'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00028R_0002',
			'tax_id' => '10090',
			'chromosome' => '14',
			'seq_start' => '55618037',
			'seq_end' => '55637895',
			'region_length' => '19858',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000002324-ENSMUSG00000002319'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 8 => 'Bladder',
	(int) 12 => 'Brain',
	(int) 17 => 'Breast',
	(int) 24 => 'Colon',
	(int) 28 => 'Heart',
	(int) 34 => 'Kidney',
	(int) 39 => 'Liver',
	(int) 46 => 'Lung',
	(int) 50 => 'Muscle',
	(int) 59 => 'Ovary',
	(int) 67 => 'Placenta',
	(int) 73 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 64
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000557806' => array(
		'start' => '24172015',
		'end' => '24172996',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'REC8-011'
	),
	'ENST00000558191' => array(
		'start' => '24178183',
		'end' => '24179688',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-008'
	),
	'ENST00000558381' => array(
		'start' => '24179528',
		'end' => '24180035',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-006'
	),
	'ENST00000559797' => array(
		'start' => '24178126',
		'end' => '24180254',
		'transcript_biotype' => 'non_stop_decay',
		'transcript_name' => 'REC8-007'
	),
	'ENST00000559939' => array(
		'start' => '24179436',
		'end' => '24180253',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'REC8-013'
	),
	'ENST00000560032' => array(
		'start' => '24172282',
		'end' => '24173163',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-004'
	),
	'ENST00000560501' => array(
		'start' => '24172611',
		'end' => '24176884',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'REC8-012'
	),
	'ENST00000560823' => array(
		'start' => '24177510',
		'end' => '24178100',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-009'
	),
	'ENST00000611366' => array(
		'start' => '24172025',
		'end' => '24180254',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'REC8-002'
	),
	'ENST00000619111' => array(
		'start' => '24175318',
		'end' => '24177918',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-005'
	),
	'ENST00000619284' => array(
		'start' => '24172749',
		'end' => '24177750',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-010'
	),
	'ENST00000619469' => array(
		'start' => '24172135',
		'end' => '24180254',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-003'
	),
	'ENST00000620473' => array(
		'start' => '24171853',
		'end' => '24180257',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'REC8-001'
	),
	'ENST00000354464' => array(
		'start' => '24180219',
		'end' => '24188964',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IPO4-001'
	),
	'ENST00000557996' => array(
		'start' => '24188102',
		'end' => '24188797',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-023'
	),
	'ENST00000558046' => array(
		'start' => '24180226',
		'end' => '24188797',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'IPO4-009'
	),
	'ENST00000558193' => array(
		'start' => '24187553',
		'end' => '24188821',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-021'
	),
	'ENST00000558233' => array(
		'start' => '24180364',
		'end' => '24183272',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IPO4-013'
	),
	'ENST00000558718' => array(
		'start' => '24187531',
		'end' => '24188797',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-016'
	),
	'ENST00000558780' => array(
		'start' => '24180220',
		'end' => '24188822',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'IPO4-004'
	),
	'ENST00000559253' => array(
		'start' => '24187087',
		'end' => '24188844',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'IPO4-018'
	),
	'ENST00000559588' => array(
		'start' => '24180305',
		'end' => '24188869',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-002'
	),
	'ENST00000559635' => array(
		'start' => '24187491',
		'end' => '24188069',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-017'
	),
	'ENST00000560155' => array(
		'start' => '24180305',
		'end' => '24188869',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'IPO4-003'
	),
	'ENST00000560222' => array(
		'start' => '24188159',
		'end' => '24188811',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-022'
	),
	'ENST00000560315' => array(
		'start' => '24187946',
		'end' => '24188797',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-020'
	),
	'ENST00000560798' => array(
		'start' => '24180220',
		'end' => '24188797',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-011'
	),
	'ENST00000560935' => array(
		'start' => '24182817',
		'end' => '24183650',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-015'
	),
	'ENST00000561034' => array(
		'start' => '24188005',
		'end' => '24188822',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'IPO4-019'
	),
	'ENST00000561090' => array(
		'start' => '24180219',
		'end' => '24188822',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-010'
	),
	'ENST00000561199' => array(
		'start' => '24180442',
		'end' => '24188797',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-008'
	),
	'ENST00000561379' => array(
		'start' => '24182536',
		'end' => '24183472',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-014'
	),
	'ENST00000561462' => array(
		'start' => '24180220',
		'end' => '24184675',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IPO4-012'
	),
	'ENST00000561419' => array(
		'start' => '24180395',
		'end' => '24190416',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'RP11-468E2.2-001'
	),
	'ENSMUST00000047131' => array(
		'start' => '55625400',
		'end' => '55635684',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ipo4-001'
	),
	'ENSMUST00000125133' => array(
		'start' => '55634048',
		'end' => '55635569',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-004'
	),
	'ENSMUST00000126064' => array(
		'start' => '55627298',
		'end' => '55627924',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-008'
	),
	'ENSMUST00000127773' => array(
		'start' => '55628783',
		'end' => '55630660',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-007'
	),
	'ENSMUST00000135221' => array(
		'start' => '55625740',
		'end' => '55635957',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Ipo4-002'
	),
	'ENSMUST00000141499' => array(
		'start' => '55625724',
		'end' => '55627390',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-010'
	),
	'ENSMUST00000141848' => array(
		'start' => '55625716',
		'end' => '55626432',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-011'
	),
	'ENSMUST00000146528' => array(
		'start' => '55625722',
		'end' => '55626417',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Ipo4-012'
	),
	'ENSMUST00000148351' => array(
		'start' => '55625634',
		'end' => '55635631',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Ipo4-003'
	),
	'ENSMUST00000148942' => array(
		'start' => '55633757',
		'end' => '55635210',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-005'
	),
	'ENSMUST00000150951' => array(
		'start' => '55632928',
		'end' => '55633658',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-006'
	),
	'ENSMUST00000155464' => array(
		'start' => '55625719',
		'end' => '55627563',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Ipo4-009'
	),
	'ENSMUST00000156420' => array(
		'start' => '55625896',
		'end' => '55637895',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Ipo4-013'
	),
	'ENSMUST00000002391' => array(
		'start' => '55636060',
		'end' => '55643340',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-002'
	),
	'ENSMUST00000120041' => array(
		'start' => '55635965',
		'end' => '55643251',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-004'
	),
	'ENSMUST00000121791' => array(
		'start' => '55636012',
		'end' => '55643354',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-008'
	),
	'ENSMUST00000121937' => array(
		'start' => '55635968',
		'end' => '55643315',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-003'
	),
	'ENSMUST00000122358' => array(
		'start' => '55635965',
		'end' => '55643806',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-001'
	),
	'ENSMUST00000127473' => array(
		'start' => '55640096',
		'end' => '55643371',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Tm9sf1-006'
	),
	'ENSMUST00000130167' => array(
		'start' => '55638301',
		'end' => '55641060',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tm9sf1-013'
	),
	'ENSMUST00000132338' => array(
		'start' => '55637833',
		'end' => '55643523',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-007'
	),
	'ENSMUST00000133707' => array(
		'start' => '55642584',
		'end' => '55643333',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-011'
	),
	'ENSMUST00000138085' => array(
		'start' => '55641418',
		'end' => '55643771',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-009'
	),
	'ENSMUST00000139313' => array(
		'start' => '55640385',
		'end' => '55643560',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tm9sf1-010'
	),
	'ENSMUST00000146588' => array(
		'start' => '55640444',
		'end' => '55641599',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Tm9sf1-012'
	),
	'ENSMUST00000149726' => array(
		'start' => '55636016',
		'end' => '55643361',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Tm9sf1-005'
	),
	'ENSMUST00000002395' => array(
		'start' => '55618037',
		'end' => '55625395',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rec8-001'
	),
	'ENSMUST00000140335' => array(
		'start' => '55618183',
		'end' => '55618816',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rec8-002'
	),
	'ENSMUST00000141425' => array(
		'start' => '55623569',
		'end' => '55624510',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rec8-003'
	),
	'ENSMUST00000155193' => array(
		'start' => '55624919',
		'end' => '55625395',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rec8-004'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_00028R_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000002319' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000002320' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000002324' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Brain',
			(int) 16 => 'Testis',
			(int) 17 => 'Muscle',
			(int) 18 => 'Muscle',
			(int) 19 => 'Ovary',
			(int) 20 => 'Placenta',
			(int) 21 => 'Breast',
			(int) 22 => 'Heart',
			(int) 23 => 'Kidney',
			(int) 24 => 'Liver',
			(int) 25 => 'Ovary',
			(int) 26 => 'Placenta',
			(int) 27 => 'Testis',
			(int) 28 => 'Adipose',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Bladder',
			(int) 31 => 'Brain',
			(int) 32 => 'Breast',
			(int) 33 => 'Colon',
			(int) 34 => 'Heart',
			(int) 35 => 'Kidney',
			(int) 36 => 'Liver',
			(int) 37 => 'Lung',
			(int) 38 => 'Muscle',
			(int) 39 => 'Ovary',
			(int) 40 => 'Placenta',
			(int) 41 => 'Adipose',
			(int) 42 => 'Bladder',
			(int) 43 => 'Breast',
			(int) 44 => 'Colon',
			(int) 45 => 'Heart',
			(int) 46 => 'Kidney',
			(int) 47 => 'Liver',
			(int) 48 => 'Lung',
			(int) 49 => 'Ovary',
			(int) 50 => 'Placenta',
			(int) 51 => 'Liver',
			(int) 52 => 'Ovary',
			(int) 53 => 'Adipose',
			(int) 54 => 'Adrenal',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Colon',
			(int) 59 => 'Heart',
			(int) 60 => 'Kidney',
			(int) 61 => 'Liver',
			(int) 62 => 'Lung',
			(int) 63 => 'Muscle',
			(int) 64 => 'Ovary',
			(int) 65 => 'Placenta',
			(int) 66 => 'Testis',
			(int) 67 => 'Breast',
			(int) 68 => 'Muscle',
			(int) 69 => 'Brain',
			(int) 70 => 'Heart',
			(int) 71 => 'Ovary',
			(int) 72 => 'Testis',
			(int) 73 => 'Breast',
			(int) 74 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_00028R_0001',
		'tax_id' => '9606',
		'chromosome' => '14',
		'seq_start' => '24171853',
		'seq_end' => '24188964',
		'region_length' => '17111',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000100918-ENSG00000196497'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_00028R_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000100918' => 'REC8 meiotic recombination protein',
		'ENSG00000196497' => 'importin 4',
		'ENSG00000259522' => null,
		'ENSMUSG00000002319' => 'importin 4',
		'ENSMUSG00000002320' => 'transmembrane 9 superfamily member 1',
		'ENSMUSG00000002324' => 'REC8 meiotic recombination protein'
	),
	'gene_name_arr' => array(
		'ENSG00000100918' => 'REC8',
		'ENSG00000196497' => 'IPO4',
		'ENSG00000259522' => 'RP11-468E2.2',
		'ENSMUSG00000002319' => 'Ipo4',
		'ENSMUSG00000002320' => 'Tm9sf1',
		'ENSMUSG00000002324' => 'Rec8'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 8 => 'Bladder',
		(int) 12 => 'Brain',
		(int) 17 => 'Breast',
		(int) 24 => 'Colon',
		(int) 28 => 'Heart',
		(int) 34 => 'Kidney',
		(int) 39 => 'Liver',
		(int) 46 => 'Lung',
		(int) 50 => 'Muscle',
		(int) 59 => 'Ovary',
		(int) 67 => 'Placenta',
		(int) 73 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 64,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000557806' => array(
			'start' => '24172015',
			'end' => '24172996',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'REC8-011'
		),
		'ENST00000558191' => array(
			'start' => '24178183',
			'end' => '24179688',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-008'
		),
		'ENST00000558381' => array(
			'start' => '24179528',
			'end' => '24180035',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-006'
		),
		'ENST00000559797' => array(
			'start' => '24178126',
			'end' => '24180254',
			'transcript_biotype' => 'non_stop_decay',
			'transcript_name' => 'REC8-007'
		),
		'ENST00000559939' => array(
			'start' => '24179436',
			'end' => '24180253',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'REC8-013'
		),
		'ENST00000560032' => array(
			'start' => '24172282',
			'end' => '24173163',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-004'
		),
		'ENST00000560501' => array(
			'start' => '24172611',
			'end' => '24176884',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'REC8-012'
		),
		'ENST00000560823' => array(
			'start' => '24177510',
			'end' => '24178100',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-009'
		),
		'ENST00000611366' => array(
			'start' => '24172025',
			'end' => '24180254',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'REC8-002'
		),
		'ENST00000619111' => array(
			'start' => '24175318',
			'end' => '24177918',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-005'
		),
		'ENST00000619284' => array(
			'start' => '24172749',
			'end' => '24177750',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-010'
		),
		'ENST00000619469' => array(
			'start' => '24172135',
			'end' => '24180254',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'REC8-003'
		),
		'ENST00000620473' => array(
			'start' => '24171853',
			'end' => '24180257',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'REC8-001'
		),
		'ENST00000354464' => array(
			'start' => '24180219',
			'end' => '24188964',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IPO4-001'
		),
		'ENST00000557996' => array(
			'start' => '24188102',
			'end' => '24188797',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-023'
		),
		'ENST00000558046' => array(
			'start' => '24180226',
			'end' => '24188797',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'IPO4-009'
		),
		'ENST00000558193' => array(
			'start' => '24187553',
			'end' => '24188821',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-021'
		),
		'ENST00000558233' => array(
			'start' => '24180364',
			'end' => '24183272',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IPO4-013'
		),
		'ENST00000558718' => array(
			'start' => '24187531',
			'end' => '24188797',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-016'
		),
		'ENST00000558780' => array(
			'start' => '24180220',
			'end' => '24188822',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'IPO4-004'
		),
		'ENST00000559253' => array(
			'start' => '24187087',
			'end' => '24188844',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'IPO4-018'
		),
		'ENST00000559588' => array(
			'start' => '24180305',
			'end' => '24188869',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-002'
		),
		'ENST00000559635' => array(
			'start' => '24187491',
			'end' => '24188069',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-017'
		),
		'ENST00000560155' => array(
			'start' => '24180305',
			'end' => '24188869',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'IPO4-003'
		),
		'ENST00000560222' => array(
			'start' => '24188159',
			'end' => '24188811',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-022'
		),
		'ENST00000560315' => array(
			'start' => '24187946',
			'end' => '24188797',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-020'
		),
		'ENST00000560798' => array(
			'start' => '24180220',
			'end' => '24188797',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-011'
		),
		'ENST00000560935' => array(
			'start' => '24182817',
			'end' => '24183650',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-015'
		),
		'ENST00000561034' => array(
			'start' => '24188005',
			'end' => '24188822',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'IPO4-019'
		),
		'ENST00000561090' => array(
			'start' => '24180219',
			'end' => '24188822',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-010'
		),
		'ENST00000561199' => array(
			'start' => '24180442',
			'end' => '24188797',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-008'
		),
		'ENST00000561379' => array(
			'start' => '24182536',
			'end' => '24183472',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IPO4-014'
		),
		'ENST00000561462' => array(
			'start' => '24180220',
			'end' => '24184675',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IPO4-012'
		),
		'ENST00000561419' => array(
			'start' => '24180395',
			'end' => '24190416',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'RP11-468E2.2-001'
		),
		'ENSMUST00000047131' => array(
			'start' => '55625400',
			'end' => '55635684',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Ipo4-001'
		),
		'ENSMUST00000125133' => array(
			'start' => '55634048',
			'end' => '55635569',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-004'
		),
		'ENSMUST00000126064' => array(
			'start' => '55627298',
			'end' => '55627924',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-008'
		),
		'ENSMUST00000127773' => array(
			'start' => '55628783',
			'end' => '55630660',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-007'
		),
		'ENSMUST00000135221' => array(
			'start' => '55625740',
			'end' => '55635957',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Ipo4-002'
		),
		'ENSMUST00000141499' => array(
			'start' => '55625724',
			'end' => '55627390',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-010'
		),
		'ENSMUST00000141848' => array(
			'start' => '55625716',
			'end' => '55626432',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-011'
		),
		'ENSMUST00000146528' => array(
			'start' => '55625722',
			'end' => '55626417',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Ipo4-012'
		),
		'ENSMUST00000148351' => array(
			'start' => '55625634',
			'end' => '55635631',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Ipo4-003'
		),
		'ENSMUST00000148942' => array(
			'start' => '55633757',
			'end' => '55635210',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-005'
		),
		'ENSMUST00000150951' => array(
			'start' => '55632928',
			'end' => '55633658',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Ipo4-006'
		),
		'ENSMUST00000155464' => array(
			'start' => '55625719',
			'end' => '55627563',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Ipo4-009'
		),
		'ENSMUST00000156420' => array(
			'start' => '55625896',
			'end' => '55637895',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Ipo4-013'
		),
		'ENSMUST00000002391' => array(
			'start' => '55636060',
			'end' => '55643340',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-002'
		),
		'ENSMUST00000120041' => array(
			'start' => '55635965',
			'end' => '55643251',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-004'
		),
		'ENSMUST00000121791' => array(
			'start' => '55636012',
			'end' => '55643354',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-008'
		),
		'ENSMUST00000121937' => array(
			'start' => '55635968',
			'end' => '55643315',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-003'
		),
		'ENSMUST00000122358' => array(
			'start' => '55635965',
			'end' => '55643806',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-001'
		),
		'ENSMUST00000127473' => array(
			'start' => '55640096',
			'end' => '55643371',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Tm9sf1-006'
		),
		'ENSMUST00000130167' => array(
			'start' => '55638301',
			'end' => '55641060',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tm9sf1-013'
		),
		'ENSMUST00000132338' => array(
			'start' => '55637833',
			'end' => '55643523',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-007'
		),
		'ENSMUST00000133707' => array(
			'start' => '55642584',
			'end' => '55643333',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-011'
		),
		'ENSMUST00000138085' => array(
			'start' => '55641418',
			'end' => '55643771',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Tm9sf1-009'
		),
		'ENSMUST00000139313' => array(
			'start' => '55640385',
			'end' => '55643560',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Tm9sf1-010'
		),
		'ENSMUST00000146588' => array(
			'start' => '55640444',
			'end' => '55641599',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Tm9sf1-012'
		),
		'ENSMUST00000149726' => array(
			'start' => '55636016',
			'end' => '55643361',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'Tm9sf1-005'
		),
		'ENSMUST00000002395' => array(
			'start' => '55618037',
			'end' => '55625395',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rec8-001'
		),
		'ENSMUST00000140335' => array(
			'start' => '55618183',
			'end' => '55618816',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rec8-002'
		),
		'ENSMUST00000141425' => array(
			'start' => '55623569',
			'end' => '55624510',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rec8-003'
		),
		'ENSMUST00000155193' => array(
			'start' => '55624919',
			'end' => '55625395',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rec8-004'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_00028R_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_00028R_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000002319' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000002320' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000002324' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Brain',
			(int) 16 => 'Testis',
			(int) 17 => 'Muscle',
			(int) 18 => 'Muscle',
			(int) 19 => 'Ovary',
			(int) 20 => 'Placenta',
			(int) 21 => 'Breast',
			(int) 22 => 'Heart',
			(int) 23 => 'Kidney',
			(int) 24 => 'Liver',
			(int) 25 => 'Ovary',
			(int) 26 => 'Placenta',
			(int) 27 => 'Testis',
			(int) 28 => 'Adipose',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Bladder',
			(int) 31 => 'Brain',
			(int) 32 => 'Breast',
			(int) 33 => 'Colon',
			(int) 34 => 'Heart',
			(int) 35 => 'Kidney',
			(int) 36 => 'Liver',
			(int) 37 => 'Lung',
			(int) 38 => 'Muscle',
			(int) 39 => 'Ovary',
			(int) 40 => 'Placenta',
			(int) 41 => 'Adipose',
			(int) 42 => 'Bladder',
			(int) 43 => 'Breast',
			(int) 44 => 'Colon',
			(int) 45 => 'Heart',
			(int) 46 => 'Kidney',
			(int) 47 => 'Liver',
			(int) 48 => 'Lung',
			(int) 49 => 'Ovary',
			(int) 50 => 'Placenta',
			(int) 51 => 'Liver',
			(int) 52 => 'Ovary',
			(int) 53 => 'Adipose',
			(int) 54 => 'Adrenal',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Colon',
			(int) 59 => 'Heart',
			(int) 60 => 'Kidney',
			(int) 61 => 'Liver',
			(int) 62 => 'Lung',
			(int) 63 => 'Muscle',
			(int) 64 => 'Ovary',
			(int) 65 => 'Placenta',
			(int) 66 => 'Testis',
			(int) 67 => 'Breast',
			(int) 68 => 'Muscle',
			(int) 69 => 'Brain',
			(int) 70 => 'Heart',
			(int) 71 => 'Ovary',
			(int) 72 => 'Testis',
			(int) 73 => 'Breast',
			(int) 74 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000100918' => 'REC8 meiotic recombination protein',
	'ENSG00000196497' => 'importin 4',
	'ENSG00000259522' => null,
	'ENSMUSG00000002319' => 'importin 4',
	'ENSMUSG00000002320' => 'transmembrane 9 superfamily member 1',
	'ENSMUSG00000002324' => 'REC8 meiotic recombination protein'
)
$gene_name_arr = array(
	'ENSG00000100918' => 'REC8',
	'ENSG00000196497' => 'IPO4',
	'ENSG00000259522' => 'RP11-468E2.2',
	'ENSMUSG00000002319' => 'Ipo4',
	'ENSMUSG00000002320' => 'Tm9sf1',
	'ENSMUSG00000002324' => 'Rec8'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00028R_0001',
			'tax_id' => '9606',
			'chromosome' => '14',
			'seq_start' => '24171853',
			'seq_end' => '24188964',
			'region_length' => '17111',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000100918-ENSG00000196497'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00028R_0002',
			'tax_id' => '10090',
			'chromosome' => '14',
			'seq_start' => '55618037',
			'seq_end' => '55637895',
			'region_length' => '19858',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000002324-ENSMUSG00000002319'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 8 => 'Bladder',
	(int) 12 => 'Brain',
	(int) 17 => 'Breast',
	(int) 24 => 'Colon',
	(int) 28 => 'Heart',
	(int) 34 => 'Kidney',
	(int) 39 => 'Liver',
	(int) 46 => 'Lung',
	(int) 50 => 'Muscle',
	(int) 59 => 'Ovary',
	(int) 67 => 'Placenta',
	(int) 73 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 64
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000557806' => array(
		'start' => '24172015',
		'end' => '24172996',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'REC8-011'
	),
	'ENST00000558191' => array(
		'start' => '24178183',
		'end' => '24179688',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-008'
	),
	'ENST00000558381' => array(
		'start' => '24179528',
		'end' => '24180035',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-006'
	),
	'ENST00000559797' => array(
		'start' => '24178126',
		'end' => '24180254',
		'transcript_biotype' => 'non_stop_decay',
		'transcript_name' => 'REC8-007'
	),
	'ENST00000559939' => array(
		'start' => '24179436',
		'end' => '24180253',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'REC8-013'
	),
	'ENST00000560032' => array(
		'start' => '24172282',
		'end' => '24173163',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-004'
	),
	'ENST00000560501' => array(
		'start' => '24172611',
		'end' => '24176884',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'REC8-012'
	),
	'ENST00000560823' => array(
		'start' => '24177510',
		'end' => '24178100',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-009'
	),
	'ENST00000611366' => array(
		'start' => '24172025',
		'end' => '24180254',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'REC8-002'
	),
	'ENST00000619111' => array(
		'start' => '24175318',
		'end' => '24177918',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-005'
	),
	'ENST00000619284' => array(
		'start' => '24172749',
		'end' => '24177750',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-010'
	),
	'ENST00000619469' => array(
		'start' => '24172135',
		'end' => '24180254',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'REC8-003'
	),
	'ENST00000620473' => array(
		'start' => '24171853',
		'end' => '24180257',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'REC8-001'
	),
	'ENST00000354464' => array(
		'start' => '24180219',
		'end' => '24188964',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IPO4-001'
	),
	'ENST00000557996' => array(
		'start' => '24188102',
		'end' => '24188797',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-023'
	),
	'ENST00000558046' => array(
		'start' => '24180226',
		'end' => '24188797',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'IPO4-009'
	),
	'ENST00000558193' => array(
		'start' => '24187553',
		'end' => '24188821',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-021'
	),
	'ENST00000558233' => array(
		'start' => '24180364',
		'end' => '24183272',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IPO4-013'
	),
	'ENST00000558718' => array(
		'start' => '24187531',
		'end' => '24188797',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-016'
	),
	'ENST00000558780' => array(
		'start' => '24180220',
		'end' => '24188822',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'IPO4-004'
	),
	'ENST00000559253' => array(
		'start' => '24187087',
		'end' => '24188844',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'IPO4-018'
	),
	'ENST00000559588' => array(
		'start' => '24180305',
		'end' => '24188869',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-002'
	),
	'ENST00000559635' => array(
		'start' => '24187491',
		'end' => '24188069',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-017'
	),
	'ENST00000560155' => array(
		'start' => '24180305',
		'end' => '24188869',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'IPO4-003'
	),
	'ENST00000560222' => array(
		'start' => '24188159',
		'end' => '24188811',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-022'
	),
	'ENST00000560315' => array(
		'start' => '24187946',
		'end' => '24188797',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-020'
	),
	'ENST00000560798' => array(
		'start' => '24180220',
		'end' => '24188797',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-011'
	),
	'ENST00000560935' => array(
		'start' => '24182817',
		'end' => '24183650',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-015'
	),
	'ENST00000561034' => array(
		'start' => '24188005',
		'end' => '24188822',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'IPO4-019'
	),
	'ENST00000561090' => array(
		'start' => '24180219',
		'end' => '24188822',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-010'
	),
	'ENST00000561199' => array(
		'start' => '24180442',
		'end' => '24188797',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-008'
	),
	'ENST00000561379' => array(
		'start' => '24182536',
		'end' => '24183472',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IPO4-014'
	),
	'ENST00000561462' => array(
		'start' => '24180220',
		'end' => '24184675',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IPO4-012'
	),
	'ENST00000561419' => array(
		'start' => '24180395',
		'end' => '24190416',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'RP11-468E2.2-001'
	),
	'ENSMUST00000047131' => array(
		'start' => '55625400',
		'end' => '55635684',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Ipo4-001'
	),
	'ENSMUST00000125133' => array(
		'start' => '55634048',
		'end' => '55635569',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-004'
	),
	'ENSMUST00000126064' => array(
		'start' => '55627298',
		'end' => '55627924',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-008'
	),
	'ENSMUST00000127773' => array(
		'start' => '55628783',
		'end' => '55630660',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-007'
	),
	'ENSMUST00000135221' => array(
		'start' => '55625740',
		'end' => '55635957',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Ipo4-002'
	),
	'ENSMUST00000141499' => array(
		'start' => '55625724',
		'end' => '55627390',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-010'
	),
	'ENSMUST00000141848' => array(
		'start' => '55625716',
		'end' => '55626432',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-011'
	),
	'ENSMUST00000146528' => array(
		'start' => '55625722',
		'end' => '55626417',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Ipo4-012'
	),
	'ENSMUST00000148351' => array(
		'start' => '55625634',
		'end' => '55635631',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Ipo4-003'
	),
	'ENSMUST00000148942' => array(
		'start' => '55633757',
		'end' => '55635210',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-005'
	),
	'ENSMUST00000150951' => array(
		'start' => '55632928',
		'end' => '55633658',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Ipo4-006'
	),
	'ENSMUST00000155464' => array(
		'start' => '55625719',
		'end' => '55627563',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Ipo4-009'
	),
	'ENSMUST00000156420' => array(
		'start' => '55625896',
		'end' => '55637895',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Ipo4-013'
	),
	'ENSMUST00000002391' => array(
		'start' => '55636060',
		'end' => '55643340',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-002'
	),
	'ENSMUST00000120041' => array(
		'start' => '55635965',
		'end' => '55643251',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-004'
	),
	'ENSMUST00000121791' => array(
		'start' => '55636012',
		'end' => '55643354',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-008'
	),
	'ENSMUST00000121937' => array(
		'start' => '55635968',
		'end' => '55643315',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-003'
	),
	'ENSMUST00000122358' => array(
		'start' => '55635965',
		'end' => '55643806',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-001'
	),
	'ENSMUST00000127473' => array(
		'start' => '55640096',
		'end' => '55643371',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Tm9sf1-006'
	),
	'ENSMUST00000130167' => array(
		'start' => '55638301',
		'end' => '55641060',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tm9sf1-013'
	),
	'ENSMUST00000132338' => array(
		'start' => '55637833',
		'end' => '55643523',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-007'
	),
	'ENSMUST00000133707' => array(
		'start' => '55642584',
		'end' => '55643333',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-011'
	),
	'ENSMUST00000138085' => array(
		'start' => '55641418',
		'end' => '55643771',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Tm9sf1-009'
	),
	'ENSMUST00000139313' => array(
		'start' => '55640385',
		'end' => '55643560',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Tm9sf1-010'
	),
	'ENSMUST00000146588' => array(
		'start' => '55640444',
		'end' => '55641599',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Tm9sf1-012'
	),
	'ENSMUST00000149726' => array(
		'start' => '55636016',
		'end' => '55643361',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'Tm9sf1-005'
	),
	'ENSMUST00000002395' => array(
		'start' => '55618037',
		'end' => '55625395',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rec8-001'
	),
	'ENSMUST00000140335' => array(
		'start' => '55618183',
		'end' => '55618816',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rec8-002'
	),
	'ENSMUST00000141425' => array(
		'start' => '55623569',
		'end' => '55624510',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rec8-003'
	),
	'ENSMUST00000155193' => array(
		'start' => '55624919',
		'end' => '55625395',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rec8-004'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_00028R_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000002319' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000002320' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000002324' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Brain',
			(int) 16 => 'Testis',
			(int) 17 => 'Muscle',
			(int) 18 => 'Muscle',
			(int) 19 => 'Ovary',
			(int) 20 => 'Placenta',
			(int) 21 => 'Breast',
			(int) 22 => 'Heart',
			(int) 23 => 'Kidney',
			(int) 24 => 'Liver',
			(int) 25 => 'Ovary',
			(int) 26 => 'Placenta',
			(int) 27 => 'Testis',
			(int) 28 => 'Adipose',
			(int) 29 => 'Adrenal',
			(int) 30 => 'Bladder',
			(int) 31 => 'Brain',
			(int) 32 => 'Breast',
			(int) 33 => 'Colon',
			(int) 34 => 'Heart',
			(int) 35 => 'Kidney',
			(int) 36 => 'Liver',
			(int) 37 => 'Lung',
			(int) 38 => 'Muscle',
			(int) 39 => 'Ovary',
			(int) 40 => 'Placenta',
			(int) 41 => 'Adipose',
			(int) 42 => 'Bladder',
			(int) 43 => 'Breast',
			(int) 44 => 'Colon',
			(int) 45 => 'Heart',
			(int) 46 => 'Kidney',
			(int) 47 => 'Liver',
			(int) 48 => 'Lung',
			(int) 49 => 'Ovary',
			(int) 50 => 'Placenta',
			(int) 51 => 'Liver',
			(int) 52 => 'Ovary',
			(int) 53 => 'Adipose',
			(int) 54 => 'Adrenal',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Colon',
			(int) 59 => 'Heart',
			(int) 60 => 'Kidney',
			(int) 61 => 'Liver',
			(int) 62 => 'Lung',
			(int) 63 => 'Muscle',
			(int) 64 => 'Ovary',
			(int) 65 => 'Placenta',
			(int) 66 => 'Testis',
			(int) 67 => 'Breast',
			(int) 68 => 'Muscle',
			(int) 69 => 'Brain',
			(int) 70 => 'Heart',
			(int) 71 => 'Ovary',
			(int) 72 => 'Testis',
			(int) 73 => 'Breast',
			(int) 74 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_00028R_0001',
		'tax_id' => '9606',
		'chromosome' => '14',
		'seq_start' => '24171853',
		'seq_end' => '24188964',
		'region_length' => '17111',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000100918-ENSG00000196497'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSG00000100918-ENSG00000196497		CGP	9606	14:24171853-24188964
Gene		Transcript	Position	Biotype

Source ID	Type	Tax ID	Position
ENSMUSG00000002324-ENSMUSG00000002319	CGP	10090	14:55618037-55637895
Gene	Transcript	Position	Biotype
ENSMUSG00000002319 (Ipo4) importin 4	ENSMUST00000047131 (Ipo4-001)	55625400-55635684	protein_coding
	ENSMUST00000125133 (Ipo4-004)	55634048-55635569	retained_intron
	ENSMUST00000126064 (Ipo4-008)	55627298-55627924	retained_intron
	ENSMUST00000127773 (Ipo4-007)	55628783-55630660	retained_intron
	ENSMUST00000135221 (Ipo4-002)	55625740-55635957	nonsense_mediated_decay
	ENSMUST00000141499 (Ipo4-010)	55625724-55627390	retained_intron
	ENSMUST00000141848 (Ipo4-011)	55625716-55626432	retained_intron
	ENSMUST00000146528 (Ipo4-012)	55625722-55626417	processed_transcript
	ENSMUST00000148351 (Ipo4-003)	55625634-55635631	nonsense_mediated_decay
	ENSMUST00000148942 (Ipo4-005)	55633757-55635210	retained_intron
	ENSMUST00000150951 (Ipo4-006)	55632928-55633658	retained_intron
	ENSMUST00000155464 (Ipo4-009)	55625719-55627563	processed_transcript
	ENSMUST00000156420 (Ipo4-013)	55625896-55637895	processed_transcript
ENSMUSG00000002320 (Tm9sf1) transmembrane 9 superfamily member 1	ENSMUST00000002391 (Tm9sf1-002)	55636060-55643340	protein_coding
	ENSMUST00000120041 (Tm9sf1-004)	55635965-55643251	protein_coding
	ENSMUST00000121791 (Tm9sf1-008)	55636012-55643354	protein_coding
	ENSMUST00000121937 (Tm9sf1-003)	55635968-55643315	protein_coding
	ENSMUST00000122358 (Tm9sf1-001)	55635965-55643806	protein_coding
	ENSMUST00000127473 (Tm9sf1-006)	55640096-55643371	retained_intron
	ENSMUST00000130167 (Tm9sf1-013)	55638301-55641060	processed_transcript
	ENSMUST00000132338 (Tm9sf1-007)	55637833-55643523	protein_coding
	ENSMUST00000133707 (Tm9sf1-011)	55642584-55643333	protein_coding
	ENSMUST00000138085 (Tm9sf1-009)	55641418-55643771	protein_coding
	ENSMUST00000139313 (Tm9sf1-010)	55640385-55643560	processed_transcript
	ENSMUST00000146588 (Tm9sf1-012)	55640444-55641599	retained_intron
	ENSMUST00000149726 (Tm9sf1-005)	55636016-55643361	nonsense_mediated_decay
ENSMUSG00000002324 (Rec8) REC8 meiotic recombination protein	ENSMUST00000002395 (Rec8-001)	55618037-55625395	protein_coding
	ENSMUST00000140335 (Rec8-002)	55618183-55618816	retained_intron
	ENSMUST00000141425 (Rec8-003)	55623569-55624510	retained_intron
	ENSMUST00000155193 (Rec8-004)	55624919-55625395	retained_intron

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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