C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 2, group F, member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002393 Nr2f6 10090 - 8:71374123-71381960 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002466 Nr2f6-001 71374127-71381960 protein_coding
  ENSMUST00000124732 Nr2f6-007 71375752-71381090 protein_coding
  ENSMUST00000127443 Nr2f6-008 71375752-71380909 processed_transcript
  ENSMUST00000132630 Nr2f6-002 71374123-71381906 processed_transcript
  ENSMUST00000137058 Nr2f6-006 71375819-71381177 protein_coding
  ENSMUST00000137734 Nr2f6-003 71374628-71375790 processed_transcript
  ENSMUST00000155463 Nr2f6-005 71374653-71375790 processed_transcript
  ENSMUST00000156270 Nr2f6-004 71375118-71375790 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002466ENSMUST00000127443ENSMUST00000137058ENSMUST00000156270
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002466 50.477±20.49 91.165±23.30 39.323±6.32 16.262±6.83 63.467±16.13 129.194±8.81 23.526±3.34 90.320±19.93 63.144±36.64 57.815±11.91 8.349±2.93 103.090±40.14 24.054±13.10 4.338±0.33
ENSMUST00000127443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 88.322±0.00 N/A N/A
ENSMUST00000137058 N/A N/A N/A 11.335±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156270 N/A N/A N/A N/A 23.435±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CI CIL_0007CI_0002 CGP 8:71366848-71379361
CIL_00010P CIL_00010P_0002 CGP 8:71371298-71381960

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0030522 IEA intracellular receptor signaling pathway
GO:0043153 IMP entrainment of circadian clock by photoperiod
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0048666 IMP neuron development
GO:0050965 IMP detection of temperature stimulus involved in sensory perception of pain

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003165 nr2f6b nuclear receptor subfamily 2, group F, member 6b protein_coding Danio_rerio
ENSDARG00000003607 nr2f6a nuclear receptor subfamily 2, group F, member 6a protein_coding Danio_rerio
ENSG00000160113 NR2F6 nuclear receptor subfamily 2, group F, member 6 protein_coding Homo_sapiens

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