C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: unconventional SNARE in the ER 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002395 Use1 10090 + 8:71366848-71369732 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019169 Use1-001 71367217-71369732 protein_coding
  ENSMUST00000110053 Use1-201 71366848-71369729 protein_coding
  ENSMUST00000110054 Use1-002 71366942-71369732 protein_coding
  ENSMUST00000127517 Use1-011 71367641-71368214 retained_intron
  ENSMUST00000136368 Use1-007 71367243-71368998 retained_intron
  ENSMUST00000137137 Use1-009 71368792-71369671 retained_intron
  ENSMUST00000139541 Use1-010 71367005-71367806 protein_coding
  ENSMUST00000140236 Use1-005 71367780-71369732 retained_intron
  ENSMUST00000142685 Use1-008 71367384-71368685 retained_intron
  ENSMUST00000143657 Use1-004 71367217-71369732 retained_intron
  ENSMUST00000146221 Use1-006 71367243-71368831 retained_intron
  ENSMUST00000154550 Use1-003 71367217-71369732 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019169ENSMUST00000110054ENSMUST00000137137ENSMUST00000140236ENSMUST00000142685ENSMUST00000143657ENSMUST00000154550
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019169 38.942±2.05 21.028±2.13 109.730±5.26 63.997±25.74 41.834±13.04 51.527±13.58 39.500±4.67 49.701±10.17 40.781±12.29 49.101±1.31 31.864±3.52 86.432±41.42 63.680±15.29 57.004±16.52
ENSMUST00000110054 N/A N/A N/A N/A N/A N/A N/A N/A 4.937±0.00 N/A 6.892±1.09 N/A 13.641±0.00 17.701±3.18
ENSMUST00000137137 N/A 13.543±2.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.458±0.91 N/A N/A
ENSMUST00000140236 N/A N/A N/A 12.465±1.18 7.744±0.00 N/A N/A N/A N/A N/A N/A 18.749±0.00 N/A N/A
ENSMUST00000142685 11.599±0.74 6.374±1.75 N/A 14.343±0.00 12.876±0.00 N/A N/A 8.647±0.00 7.288±0.00 N/A N/A 18.154±3.41 N/A N/A
ENSMUST00000143657 N/A N/A N/A N/A 3.107±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154550 11.628±2.92 5.155±0.00 N/A N/A N/A 8.449±0.29 11.388±3.47 9.089±0.85 6.448±0.00 N/A 13.216±2.63 N/A N/A 17.390±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GE CIL_0006GE_0002 CGP 8:71272714-71369732
CIL_0007CI CIL_0007CI_0002 CGP 8:71366848-71379361

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0007029 IMP endoplasmic reticulum organization
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0060628 IMP regulation of ER to Golgi vesicle-mediated transport
GO:0071786 IMP endoplasmic reticulum tubular network organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007250 use1 unconventional SNARE in the ER 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000053501 USE1 unconventional SNARE in the ER 1 homolog (S. cerevisiae) protein_coding Homo_sapiens

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