C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: unconventional SNARE in the ER 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000053501 USE1 9606 + 19:17215346-17219829 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263897 USE1-004 17215359-17219829 protein_coding
  ENST00000445667 USE1-201 17215398-17219829 protein_coding
  ENST00000593597 USE1-008 17215720-17219640 protein_coding
  ENST00000594399 USE1-009 17215829-17217670 retained_intron
  ENST00000594724 USE1-007 17215398-17219819 nonsense_mediated_decay
  ENST00000595101 USE1-002 17215388-17218826 protein_coding
  ENST00000596136 USE1-001 17215390-17219829 protein_coding
  ENST00000600970 USE1-003 17215375-17219829 nonsense_mediated_decay
  ENST00000601592 USE1-006 17215392-17217489 retained_intron
  ENST00000601662 USE1-005 17215346-17217617 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263897ENST00000445667ENST00000593597ENST00000594724ENST00000595101ENST00000600970ENST00000601592ENST00000601662
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263897 9.401±0.00 12.639±0.00 0.529±0.00 7.541±5.46 14.649±0.00 7.113±5.65 5.919±5.41 7.299±4.30 10.509±0.00 5.567±2.93 14.634±0.00 22.287±13.15 21.301±2.26 11.955±4.41
ENST00000445667 N/A N/A N/A N/A N/A N/A N/A N/A 0.272±0.00 N/A N/A 0.146±0.00 N/A N/A
ENST00000593597 N/A N/A N/A N/A 4.628±3.10 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594724 4.567±0.00 15.358±0.00 0.258±0.00 11.444±5.40 8.372±5.57 6.366±5.24 3.752±0.00 8.279±0.00 7.628±6.64 2.022±1.52 18.634±0.00 N/A N/A 13.953±0.00
ENST00000595101 N/A 2.010±0.00 N/A N/A N/A N/A N/A 0.451±0.00 0.110±0.00 N/A N/A N/A N/A 1.226±0.01
ENST00000600970 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.065±0.00 N/A N/A N/A N/A
ENST00000601592 N/A N/A 0.329±0.00 N/A N/A N/A 0.200±0.00 N/A 1.599±0.00 N/A 0.848±0.00 1.007±0.00 N/A N/A
ENST00000601662 N/A N/A N/A N/A N/A N/A 0.215±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GE CIL_0006GE_0001 CGP 19:17075781-17219829
CIL_0007CI CIL_0007CI_0001 CGP 19:17215346-17229219

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0007029 IEA endoplasmic reticulum organization
GO:0007041 ISS lysosomal transport
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0030163 ISS protein catabolic process
GO:0032940 ISS secretion by cell
GO:0060628 IEA regulation of ER to Golgi vesicle-mediated transport
GO:0071786 IEA endoplasmic reticulum tubular network organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007250 use1 unconventional SNARE in the ER 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000002395 Use1 unconventional SNARE in the ER 1 homolog (S. cerevisiae) protein_coding Mus_musculus

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