C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polynucleotide kinase 3'- phosphatase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002963 Pnkp 10090 + 7:44857139-44862925 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003044 Pnkp-001 44857141-44862925 protein_coding
  ENSMUST00000098478 Pnkp-004 44857344-44862649 protein_coding
  ENSMUST00000107876 Pnkp-002 44857139-44862650 protein_coding
  ENSMUST00000123015 Pnkp-005 44857404-44862650 processed_transcript
  ENSMUST00000124168 Pnkp-009 44857340-44861250 retained_intron
  ENSMUST00000126860 Pnkp-011 44860545-44861672 retained_intron
  ENSMUST00000139003 Pnkp-008 44857340-44860184 processed_transcript
  ENSMUST00000144669 Pnkp-012 44861697-44862650 retained_intron
  ENSMUST00000145850 Pnkp-003 44857339-44862656 retained_intron
  ENSMUST00000152747 Pnkp-010 44860425-44861320 retained_intron
  ENSMUST00000154968 Pnkp-006 44857151-44857505 protein_coding
  ENSMUST00000155050 Pnkp-007 44857167-44858760 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003044ENSMUST00000098478ENSMUST00000107876ENSMUST00000123015ENSMUST00000139003ENSMUST00000145850ENSMUST00000155050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003044 5.287±0.65 9.713±3.15 4.176±0.07 3.505±0.52 8.845±2.87 8.385±2.62 2.974±1.05 5.410±1.21 5.558±1.27 9.764±1.07 2.166±0.76 6.065±2.24 4.135±0.23 5.182±1.11
ENSMUST00000098478 4.526±1.48 21.746±0.98 N/A N/A 7.588±3.00 4.650±0.82 1.083±0.00 3.425±0.83 4.409±1.17 4.721±1.43 2.337±0.23 6.062±2.31 1.503±0.10 2.812±0.54
ENSMUST00000107876 5.365±0.63 4.883±0.65 6.687±0.29 2.939±0.05 4.531±1.54 5.483±1.50 3.818±0.20 6.033±1.25 5.361±1.18 5.695±0.74 6.971±0.79 5.317±1.82 5.560±3.03 2.039±0.37
ENSMUST00000123015 N/A N/A N/A N/A 1.909±0.00 N/A N/A N/A N/A N/A N/A 5.495±0.49 4.568±1.54 5.826±0.00
ENSMUST00000139003 N/A N/A N/A N/A 4.108±0.00 N/A N/A N/A N/A N/A N/A 7.269±0.00 N/A N/A
ENSMUST00000145850 N/A N/A N/A 1.482±0.00 2.073±1.11 2.921±0.00 N/A N/A N/A N/A N/A 2.279±0.00 N/A N/A
ENSMUST00000155050 N/A 13.483±3.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006281 IEA DNA repair
GO:0006979 IEA response to oxidative stress
GO:0016020 IEA membrane
GO:0016311 IEA dephosphorylation
GO:0019201 IEA nucleotide kinase activity
GO:0042769 IEA DNA damage response, detection of DNA damage
GO:0046403 IEA polynucleotide 3'-phosphatase activity
GO:0046404 IEA ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0046939 IEA nucleotide phosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068521 pnkp polynucleotide kinase 3'-phosphatase protein_coding Danio_rerio
ENSG00000039650 PNKP polynucleotide kinase 3'-phosphatase protein_coding Homo_sapiens

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