C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polynucleotide kinase 3'- phosphatase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000003044 Pnkp-001 ENSMUSG00000002963 10090 + 7:44857141-44862925 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003044
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003044 5.287±0.65 9.713±3.15 4.176±0.07 3.505±0.52 8.845±2.87 8.385±2.62 2.974±1.05 5.410±1.21 5.558±1.27 9.764±1.07 2.166±0.76 6.065±2.24 4.135±0.23 5.182±1.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006281 IEA DNA repair
GO:0006979 IEA response to oxidative stress
GO:0016020 IEA membrane
GO:0016311 IEA dephosphorylation
GO:0019201 IEA nucleotide kinase activity
GO:0042769 IEA DNA damage response, detection of DNA damage
GO:0046403 IEA polynucleotide 3'-phosphatase activity
GO:0046404 IEA ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
GO:0046939 IEA nucleotide phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322344 PNKP-001 protein_coding Homo_sapiens 0 1160
ENST00000593706 PNKP-011 retained_intron Homo_sapiens 0 407
ENST00000593946 PNKP-005 nonsense_mediated_decay Homo_sapiens 0 1037
ENST00000594661 PNKP-006 retained_intron Homo_sapiens 0 745
ENST00000596014 PNKP-004 protein_coding Homo_sapiens 0 1160
ENST00000600573 PNKP-002 protein_coding Homo_sapiens 0 721
ENST00000600910 PNKP-003 protein_coding Homo_sapiens 0 928

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