C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102553 Hmgn2-001 ENSMUSG00000003038 10090 - 4:133964738-133968001 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102553
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102553 19.593±3.17 8.105±1.65 50.354±2.34 135.610±99.58 5.865±1.85 7.370±2.09 11.140±0.73 8.320±1.79 88.176±94.33 11.991±1.55 13.471±3.03 18.872±16.49 87.628±76.53 7.221±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0031492 IEA nucleosomal DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261249 TRMT5-001 protein_coding Homo_sapiens 0 497
ENST00000313559 HMGN2P46-004 processed_transcript Homo_sapiens 0 503
ENST00000361427 HMGN2-001 protein_coding Homo_sapiens 0 1061
ENST00000391458 HMGN2P8-001 processed_pseudogene Homo_sapiens 0 340
ENST00000396644 HMGN2P46-003 processed_transcript Homo_sapiens 0 503
ENST00000396645 HMGN2P46-005 processed_transcript Homo_sapiens 0 503
ENST00000398005 HMGN2P39-001 processed_pseudogene Homo_sapiens 0 257
ENST00000409454 HMGN2P46-002 processed_transcript Homo_sapiens 0 695
ENST00000412164 HMGN2P35-001 processed_pseudogene Homo_sapiens 0 311
ENST00000421099 U82670.9-001 processed_pseudogene Homo_sapiens 0 294
ENST00000421698 RP11-741G21.1-001 processed_pseudogene Homo_sapiens 0 390
ENST00000423237 HMGN2P30-001 processed_pseudogene Homo_sapiens 0 265
ENST00000423806 HMGN2P38-001 processed_pseudogene Homo_sapiens 0 337
ENST00000425149 HMGN2P19-001 processed_pseudogene Homo_sapiens 0 331
ENST00000425872 HMGN2P17-001 processed_pseudogene Homo_sapiens 0 673
ENST00000427352 HMGN2P27-001 processed_pseudogene Homo_sapiens 0 366
ENST00000427588 HMGN2P22-001 processed_pseudogene Homo_sapiens 0 259
ENST00000433516 HMGN2P24-001 processed_pseudogene Homo_sapiens 0 370
ENST00000433603 HMGN2P3-001 processed_pseudogene Homo_sapiens 0 405
ENST00000436882 HMGN2P5-001 processed_pseudogene Homo_sapiens 0 411
ENST00000437531 HMGN2P20-001 processed_pseudogene Homo_sapiens 0 344
ENST00000437647 HMGN2P34-001 processed_pseudogene Homo_sapiens 0 309
ENST00000444542 RP1-232L24.2-001 processed_pseudogene Homo_sapiens 0 344
ENST00000444648 HMGN2P32-001 processed_pseudogene Homo_sapiens 0 337
ENST00000446054 HMGN2P11-001 processed_pseudogene Homo_sapiens 0 355
ENST00000447764 HMGN2P21-001 processed_pseudogene Homo_sapiens 0 300
ENST00000448085 HMGN2P10-001 processed_pseudogene Homo_sapiens 0 333
ENST00000450680 HMGN2P18-001 processed_pseudogene Homo_sapiens 0 363
ENST00000456186 HMGN2P7-001 processed_pseudogene Homo_sapiens 0 383
ENST00000456802 HMGN2P16-001 processed_pseudogene Homo_sapiens 0 189
ENST00000460563 HMGN2-004 processed_transcript Homo_sapiens 0 551
ENST00000463817 HMGN2-006 processed_transcript Homo_sapiens 0 643
ENST00000464888 HMGN2-005 processed_transcript Homo_sapiens 0 344
ENST00000466194 HMGN2-009 processed_transcript Homo_sapiens 0 701
ENST00000467700 HMGN2-007 processed_transcript Homo_sapiens 0 592
ENST00000468388 HMGN2-002 processed_transcript Homo_sapiens 0 261
ENST00000476476 HMGN2P13-001 processed_pseudogene Homo_sapiens 0 311
ENST00000476875 HMGN2P9-001 processed_pseudogene Homo_sapiens 0 248
ENST00000479815 HMGN2-003 processed_transcript Homo_sapiens 0 420
ENST00000486956 HMGN2P25-001 processed_pseudogene Homo_sapiens 0 357
ENST00000493418 HMGN2-008 processed_transcript Homo_sapiens 0 316
ENST00000505955 RP11-79P5.3-002 processed_transcript Homo_sapiens 0 462
ENST00000506772 HMGN2P4-001 processed_pseudogene Homo_sapiens 0 431
ENST00000514718 RP11-79P5.3-001 transcribed_processed_pseudogene Homo_sapiens 0 340
ENST00000533158 RP11-958J22.2-001 processed_pseudogene Homo_sapiens 0 281
ENST00000551091 HMGN2P6-001 processed_pseudogene Homo_sapiens 0 383
ENST00000555320 RP11-757H14.2-001 processed_pseudogene Homo_sapiens 0 344
ENST00000556317 RP11-193F5.4-001 processed_pseudogene Homo_sapiens 0 270
ENST00000559378 HMGN2P47-001 processed_pseudogene Homo_sapiens 0 418
ENST00000560007 CTD-2651B20.5-001 processed_pseudogene Homo_sapiens 0 296
ENST00000564594 HMGN2P46-007 processed_transcript Homo_sapiens 0 270
ENST00000566875 HMGN2P40-001 processed_pseudogene Homo_sapiens 0 438
ENST00000566966 RP11-331H13.1-001 processed_pseudogene Homo_sapiens 0 281
ENST00000569073 CTD-2562G15.2-001 processed_pseudogene Homo_sapiens 0 291
ENST00000569492 HMGN2P41-001 processed_pseudogene Homo_sapiens 0 409
ENST00000585707 HMGN2P15-001 processed_pseudogene Homo_sapiens 0 377
ENST00000588627 RPL12P38-002 processed_transcript Homo_sapiens 0 865
ENST00000598619 HMGN2P46-001 transcribed_processed_pseudogene Homo_sapiens 0 390
ENST00000602394 RP11-158D2.1-001 processed_pseudogene Homo_sapiens 0 344
ENST00000606102 HMGN2P28-001 processed_pseudogene Homo_sapiens 0 307
ENST00000612378 AC243587.1-201 processed_pseudogene Homo_sapiens 0 411
ENST00000617011 RP1-232L24.2-001 processed_pseudogene Homo_sapiens 0 344
ENST00000619352 HMGN2-201 protein_coding Homo_sapiens 0 1029

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