C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145025 Hmgn2-002 ENSMUSG00000003038 10090 - 4:133964991-133967908 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000145025
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000145025 2.740±0.23 1.806±1.08 1.003±0.33 0.889±0.14 1.093±0.00 0.481±0.01 0.149±0.00 1.459±0.35 2.592±1.10 1.569±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261249 TRMT5-001 protein_coding Homo_sapiens 0 329
ENST00000313559 HMGN2P46-004 processed_transcript Homo_sapiens 0 398
ENST00000361427 HMGN2-001 protein_coding Homo_sapiens 0 608
ENST00000391458 HMGN2P8-001 processed_pseudogene Homo_sapiens 0 241
ENST00000396644 HMGN2P46-003 processed_transcript Homo_sapiens 0 398
ENST00000396645 HMGN2P46-005 processed_transcript Homo_sapiens 0 398
ENST00000398005 HMGN2P39-001 processed_pseudogene Homo_sapiens 0 191
ENST00000409454 HMGN2P46-002 processed_transcript Homo_sapiens 0 438
ENST00000412164 HMGN2P35-001 processed_pseudogene Homo_sapiens 0 206
ENST00000421099 U82670.9-001 processed_pseudogene Homo_sapiens 0 195
ENST00000421698 RP11-741G21.1-001 processed_pseudogene Homo_sapiens 0 274
ENST00000423237 HMGN2P30-001 processed_pseudogene Homo_sapiens 2e-39 165
ENST00000423806 HMGN2P38-001 processed_pseudogene Homo_sapiens 0 222
ENST00000425149 HMGN2P19-001 processed_pseudogene Homo_sapiens 0 231
ENST00000425872 HMGN2P17-001 processed_pseudogene Homo_sapiens 0 518
ENST00000427352 HMGN2P27-001 processed_pseudogene Homo_sapiens 0 239
ENST00000427588 HMGN2P22-001 processed_pseudogene Homo_sapiens 1e-24 115
ENST00000433516 HMGN2P24-001 processed_pseudogene Homo_sapiens 0 255
ENST00000433603 HMGN2P3-001 processed_pseudogene Homo_sapiens 0 272
ENST00000436882 HMGN2P5-001 processed_pseudogene Homo_sapiens 0 278
ENST00000437647 HMGN2P34-001 processed_pseudogene Homo_sapiens 0 215
ENST00000444542 RP1-232L24.2-001 processed_pseudogene Homo_sapiens 0 222
ENST00000444648 HMGN2P32-001 processed_pseudogene Homo_sapiens 0 231
ENST00000446054 HMGN2P11-001 processed_pseudogene Homo_sapiens 0 263
ENST00000447764 HMGN2P21-001 processed_pseudogene Homo_sapiens 0 228
ENST00000448085 HMGN2P10-001 processed_pseudogene Homo_sapiens 0 219
ENST00000450680 HMGN2P18-001 processed_pseudogene Homo_sapiens 0 246
ENST00000456186 HMGN2P7-001 processed_pseudogene Homo_sapiens 0 261
ENST00000456802 HMGN2P16-001 processed_pseudogene Homo_sapiens 1e-31 139
ENST00000460563 HMGN2-004 processed_transcript Homo_sapiens 0 564
ENST00000463817 HMGN2-006 processed_transcript Homo_sapiens 0 592
ENST00000464888 HMGN2-005 processed_transcript Homo_sapiens 0 291
ENST00000466194 HMGN2-009 processed_transcript Homo_sapiens 0 592
ENST00000467700 HMGN2-007 processed_transcript Homo_sapiens 0 593
ENST00000468388 HMGN2-002 processed_transcript Homo_sapiens 0.000000000001 77
ENST00000476476 HMGN2P13-001 processed_pseudogene Homo_sapiens 0 220
ENST00000476875 HMGN2P9-001 processed_pseudogene Homo_sapiens 0 207
ENST00000479815 HMGN2-003 processed_transcript Homo_sapiens 0 433
ENST00000486956 HMGN2P25-001 processed_pseudogene Homo_sapiens 0 235
ENST00000493418 HMGN2-008 processed_transcript Homo_sapiens 0 316
ENST00000505955 RP11-79P5.3-002 processed_transcript Homo_sapiens 0 361
ENST00000506772 HMGN2P4-001 processed_pseudogene Homo_sapiens 0 248
ENST00000514718 RP11-79P5.3-001 transcribed_processed_pseudogene Homo_sapiens 0 239
ENST00000533158 RP11-958J22.2-001 processed_pseudogene Homo_sapiens 1.4013e-45 185
ENST00000551091 HMGN2P6-001 processed_pseudogene Homo_sapiens 0 261
ENST00000555320 RP11-757H14.2-001 processed_pseudogene Homo_sapiens 0 233
ENST00000556317 RP11-193F5.4-001 processed_pseudogene Homo_sapiens 6e-33 143
ENST00000559378 HMGN2P47-001 processed_pseudogene Homo_sapiens 0 311
ENST00000560007 CTD-2651B20.5-001 processed_pseudogene Homo_sapiens 0 215
ENST00000564594 HMGN2P46-007 processed_transcript Homo_sapiens 4e-39 165
ENST00000566875 HMGN2P40-001 processed_pseudogene Homo_sapiens 0 318
ENST00000566966 RP11-331H13.1-001 processed_pseudogene Homo_sapiens 0 217
ENST00000569073 CTD-2562G15.2-001 processed_pseudogene Homo_sapiens 0 195
ENST00000569492 HMGN2P41-001 processed_pseudogene Homo_sapiens 0 276
ENST00000585707 HMGN2P15-001 processed_pseudogene Homo_sapiens 0 255
ENST00000588627 RPL12P38-002 processed_transcript Homo_sapiens 0 532
ENST00000598619 HMGN2P46-001 transcribed_processed_pseudogene Homo_sapiens 0 285
ENST00000602394 RP11-158D2.1-001 processed_pseudogene Homo_sapiens 0 226
ENST00000606102 HMGN2P28-001 processed_pseudogene Homo_sapiens 0 213
ENST00000612378 AC243587.1-201 processed_pseudogene Homo_sapiens 0 278
ENST00000617011 RP1-232L24.2-001 processed_pseudogene Homo_sapiens 0 222
ENST00000619352 HMGN2-201 protein_coding Homo_sapiens 0 608

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