C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB3B, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003411 Rab3b 10090 + 4:108879063-108943324 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003502 Rab3b-003 108890290-108941188 protein_coding
  ENSMUST00000106650 Rab3b-001 108879063-108943324 protein_coding
  ENSMUST00000106651 Rab3b-002 108879200-108941185 protein_coding
  ENSMUST00000157062 Rab3b-004 108939100-108940905 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003502ENSMUST00000106650ENSMUST00000106651ENSMUST00000157062
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003502 0.504±0.29 20.720±8.37 1.199±0.11 19.031±9.02 0.380±0.17 17.798±2.62 1.636±0.24 6.458±0.72 0.592±0.35 0.725±0.20 0.131±0.07 1.194±0.82 1.765±1.03 2.324±1.08
ENSMUST00000106650 0.096±0.06 4.844±1.27 0.210±0.06 2.928±0.57 0.046±0.01 2.689±0.51 0.589±0.07 2.377±0.35 0.162±0.10 0.080±0.03 0.013±0.00 0.192±0.14 0.155±0.10 0.784±0.38
ENSMUST00000106651 0.195±0.00 11.152±1.37 N/A N/A 0.277±0.00 N/A 0.413±0.00 N/A N/A 0.167±0.01 N/A 0.801±0.46 0.524±0.00 N/A
ENSMUST00000157062 N/A N/A N/A N/A N/A N/A N/A N/A 0.452±0.08 N/A 0.197±0.07 1.297±0.84 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001W2 CIL_0001W2_0002 CGP 4:108879063-109061777

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008021 IDA synaptic vesicle
GO:0015031 IEA protein transport
GO:0017157 IDA regulation of exocytosis
GO:0018125 IDA peptidyl-cysteine methylation
GO:0019003 IEA GDP binding
GO:0019882 IEA antigen processing and presentation
GO:0030141 IDA secretory granule
GO:0031489 IEA myosin V binding
GO:0031982 IEA vesicle
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051586 IEA positive regulation of dopamine uptake involved in synaptic transmission
GO:0070062 IEA extracellular vesicular exosome
GO:0097494 IEA regulation of vesicle size

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042803 rab3b RAB3B, member RAS oncogene family protein_coding Danio_rerio
ENSG00000169213 RAB3B RAB3B, member RAS oncogene family protein_coding Homo_sapiens

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