C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB3B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106650 Rab3b-001 ENSMUSG00000003411 10090 + 4:108879063-108943324 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106650
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106650 0.096±0.06 4.844±1.27 0.210±0.06 2.928±0.57 0.046±0.01 2.689±0.51 0.589±0.07 2.377±0.35 0.162±0.10 0.080±0.03 0.013±0.00 0.192±0.14 0.155±0.10 0.784±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001W2 CIL_0001W2_0002 CGP 4:108879063-109061777

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008021 IDA synaptic vesicle
GO:0015031 IEA protein transport
GO:0017157 IDA regulation of exocytosis
GO:0018125 IDA peptidyl-cysteine methylation
GO:0019003 IEA GDP binding
GO:0019882 IEA antigen processing and presentation
GO:0030141 IDA secretory granule
GO:0031489 IEA myosin V binding
GO:0031982 IEA vesicle
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051586 IEA positive regulation of dopamine uptake involved in synaptic transmission
GO:0070062 IEA extracellular vesicular exosome
GO:0097494 IEA regulation of vesicle size

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222256 RAB3A-001 protein_coding Homo_sapiens 0 496
ENST00000371655 RAB3B-001 protein_coding Homo_sapiens 0 196
ENST00000464076 RAB3A-002 protein_coding Homo_sapiens 0 322
ENST00000481914 RAB3A-003 protein_coding Homo_sapiens 0 340

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