C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 200 (U5)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003660 Snrnp200 10090 + 2:127208386-127240451 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103220 Snrnp200-001 127208399-127240451 protein_coding
  ENSMUST00000131435 Snrnp200-005 127238092-127239960 retained_intron
  ENSMUST00000140868 Snrnp200-003 127221695-127225157 processed_transcript
  ENSMUST00000142327 Snrnp200-002 127208386-127222717 retained_intron
  ENSMUST00000143481 Snrnp200-004 127236809-127238326 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103220ENSMUST00000143481
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103220 22.671±3.99 12.769±3.55 14.209±0.94 26.473±1.18 19.738±3.61 14.163±2.85 12.762±1.46 19.135±2.52 12.019±3.53 25.813±2.70 10.581±0.49 32.306±3.07 19.802±8.12 20.799±1.48
ENSMUST00000143481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.782±13.35 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0004004 ISS ATP-dependent RNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005682 IEA U5 snRNP
GO:0006200 IEA ATP catabolic process
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077536 snrnp200 small nuclear ribonucleoprotein 200 (U5) protein_coding Danio_rerio
ENSG00000144028 SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) protein_coding Homo_sapiens

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