C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 200kDa (U5)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144028 SNRNP200 9606 - 2:96274336-96305515 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323853 SNRNP200-001 96274336-96305515 protein_coding
  ENST00000429650 SNRNP200-006 96275017-96285376 nonsense_mediated_decay
  ENST00000480242 SNRNP200-004 96281185-96284874 retained_intron
  ENST00000480615 SNRNP200-003 96284815-96289855 retained_intron
  ENST00000480835 SNRNP200-009 96277534-96278359 retained_intron
  ENST00000484372 SNRNP200-008 96278678-96279807 retained_intron
  ENST00000493271 SNRNP200-007 96279187-96282025 retained_intron
  ENST00000497539 SNRNP200-005 96274731-96284723 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323853ENST00000480615ENST00000497539
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323853 19.525±0.00 14.342±0.00 4.366±0.00 10.757±4.50 8.678±3.28 9.376±1.57 2.504±0.16 8.632±3.91 7.000±1.72 10.661±0.71 14.472±9.22 14.273±6.87 16.862±2.85 21.642±1.80
ENST00000480615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 40.633±0.00 18.415±0.00 21.247±0.00
ENST00000497539 12.854±0.00 37.438±0.00 N/A 11.483±0.00 19.814±0.00 N/A 5.291±0.00 9.127±0.00 14.452±0.00 19.813±0.00 14.021±10.86 54.386±30.76 27.335±8.42 34.741±0.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000354 IC cis assembly of pre-catalytic spliceosome
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001649 IDA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004004 IDA ATP-dependent RNA helicase activity
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005682 IDA U5 snRNP
GO:0006200 IDA ATP catabolic process
GO:0008026 IDA ATP-dependent helicase activity
GO:0008152 IEA metabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016787 IEA hydrolase activity
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077536 snrnp200 small nuclear ribonucleoprotein 200 (U5) protein_coding Danio_rerio
ENSMUSG00000003660 Snrnp200 small nuclear ribonucleoprotein 200 (U5) protein_coding Mus_musculus

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