C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein 200 (U5)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103220 Snrnp200-001 ENSMUSG00000003660 10090 + 2:127208399-127240451 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103220
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103220 22.671±3.99 12.769±3.55 14.209±0.94 26.473±1.18 19.738±3.61 14.163±2.85 12.762±1.46 19.135±2.52 12.019±3.53 25.813±2.70 10.581±0.49 32.306±3.07 19.802±8.12 20.799±1.48

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0004004 ISS ATP-dependent RNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005682 IEA U5 snRNP
GO:0006200 IEA ATP catabolic process
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109885 snrnp200-001 protein_coding Danio_rerio 0 4327
ENSDART00000143385 snrnp200-002 processed_transcript Danio_rerio 0 348
ENST00000323853 SNRNP200-001 protein_coding Homo_sapiens 0 8626
ENST00000429650 SNRNP200-006 nonsense_mediated_decay Homo_sapiens 0 2682
ENST00000480242 SNRNP200-004 retained_intron Homo_sapiens 0 721
ENST00000480615 SNRNP200-003 retained_intron Homo_sapiens 0 1736
ENST00000480835 SNRNP200-009 retained_intron Homo_sapiens 0 335
ENST00000484372 SNRNP200-008 retained_intron Homo_sapiens 0 483
ENST00000493271 SNRNP200-007 retained_intron Homo_sapiens 0 318
ENST00000497539 SNRNP200-005 retained_intron Homo_sapiens 0 3133
ENST00000583145 RP13-104F24.3-001 unprocessed_pseudogene Homo_sapiens 0 1110

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