C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: karyopherin (importin) alpha 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003731 Kpna6 10090 - 4:129643980-129672767 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003828 Kpna6-003 129647484-129662479 protein_coding
  ENSMUST00000102590 Kpna6-001 129643980-129672767 protein_coding
  ENSMUST00000126010 Kpna6-002 129657447-129672528 protein_coding
  ENSMUST00000138916 Kpna6-005 129653656-129654935 retained_intron
  ENSMUST00000146215 Kpna6-006 129654304-129656726 retained_intron
  ENSMUST00000146361 Kpna6-004 129660997-129672767 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003828ENSMUST00000102590ENSMUST00000126010
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.799±5.57 59.151±7.36
ENSMUST00000102590 5.626±1.10 15.221±6.13 15.611±0.65 12.168±1.08 9.442±9.04 6.806±3.07 6.483±0.89 8.147±3.63 9.294±2.17 3.908±0.63 19.432±0.50 9.171±4.18 15.258±4.27 11.839±6.71
ENSMUST00000126010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 134.848±0.00 461.037±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0002 VISTA 4:129413466-130014337

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006606 IDA protein import into nucleus
GO:0008565 IDA protein transporter activity
GO:0016020 IEA membrane
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0060135 IMP maternal process involved in female pregnancy

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044980 KPNA6 karyopherin alpha 6 (importin alpha 7) protein_coding Danio_rerio
ENSG00000025800 KPNA6 karyopherin alpha 6 (importin alpha 7) protein_coding Homo_sapiens

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