C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glutaryl-Coenzyme A dehydrogenase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003809 Gcdh 10090 - 8:84886393-84893921 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003907 Gcdh-001 84886393-84893917 protein_coding
  ENSMUST00000109745 Gcdh-201 84886393-84893921 protein_coding
  ENSMUST00000128023 Gcdh-003 84892651-84893475 retained_intron
  ENSMUST00000136462 Gcdh-002 84890937-84892666 retained_intron
  ENSMUST00000139180 Gcdh-004 84890738-84893285 retained_intron
  ENSMUST00000142748 Gcdh-005 84893094-84893921 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003907ENSMUST00000109745ENSMUST00000128023ENSMUST00000139180ENSMUST00000142748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003907 12.408±0.84 16.430±5.57 5.140±0.73 9.811±0.92 11.860±2.04 11.070±2.49 5.879±2.62 129.701±14.16 125.533±103.82 7.239±0.35 5.677±0.84 9.931±5.25 5.219±2.67 1.701±0.24
ENSMUST00000109745 N/A 16.082±1.86 1.945±0.00 5.042±0.00 6.497±0.00 9.087±0.00 8.506±2.67 N/A 12.603±5.29 N/A 12.780±3.29 7.942±3.94 7.302±2.90 0.426±0.04
ENSMUST00000128023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.714±0.00
ENSMUST00000139180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.116±0.00 0.986±0.00
ENSMUST00000142748 39.059±3.72 294.979±41.65 N/A N/A 72.957±22.17 60.677±9.10 28.802±2.63 215.220±18.32 719.291±36.90 31.481±4.41 N/A 62.186±10.89 N/A 3.436±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0006LV CIL_0006LV_0002 CGP 8:84856989-84888221
CIL_00076Z CIL_00076Z_0002 CGP 8:84872111-84893921

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000062 IEA fatty-acyl-CoA binding
GO:0003995 IEA acyl-CoA dehydrogenase activity
GO:0004361 IEA glutaryl-CoA dehydrogenase activity
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006568 IEA tryptophan metabolic process
GO:0006637 IEA acyl-CoA metabolic process
GO:0019395 IEA fatty acid oxidation
GO:0046949 IEA fatty-acyl-CoA biosynthetic process
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037057 gcdh glutaryl-Coenzyme A dehydrogenase protein_coding Danio_rerio
ENSDARG00000038361 gcdhl glutaryl-Coenzyme A dehydrogenase, like protein_coding Danio_rerio
ENSG00000105607 GCDH glutaryl-CoA dehydrogenase protein_coding Homo_sapiens

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