C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006LV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000032750-ENSDARG00000058375 CGP 7955 3:405572-461955
GeneTranscriptPositionBiotype
ENSDARG00000032750 (farsa)
phenylalanyl-tRNA synthetase, alpha subunit 		ENSDART00000033738 (farsa-001) 405572-427200 protein_coding
ENSDARG00000058375 (syce2)
synaptonemal complex central element protein 2 		ENSDART00000081244 (syce2-201) 456026-461955 protein_coding
ENSDARG00000094702 (si:dkey-61n16.5)
si:dkey-61n16.5 		ENSDART00000135542 (si:dkey-61n16.5-001) 446343-447299 processed_transcript
CIL_0006LV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003808-ENSMUSG00000003824 CGP 10090 8:84856989-84888221
GeneTranscriptPositionBiotype
ENSMUSG00000003808 (Farsa)
phenylalanyl-tRNA synthetase, alpha subunit 		ENSMUST00000003906 (Farsa-001) 84856989-84869257 protein_coding
ENSMUST00000109754 (Farsa-002) 84857017-84869257 protein_coding
ENSMUST00000129595 (Farsa-005) 84856995-84869256 retained_intron
ENSMUST00000141480 (Farsa-006) 84867563-84869010 retained_intron
ENSMUST00000144404 (Farsa-004) 84857009-84867026 retained_intron
ENSMUST00000156970 (Farsa-003) 84857020-84869256 nonsense_mediated_decay
ENSMUSG00000003809 (Gcdh)
glutaryl-Coenzyme A dehydrogenase 		ENSMUST00000003907 (Gcdh-001) 84886393-84893917 protein_coding
ENSMUST00000109745 (Gcdh-201) 84886393-84893921 protein_coding
ENSMUST00000128023 (Gcdh-003) 84892651-84893475 retained_intron
ENSMUST00000136462 (Gcdh-002) 84890937-84892666 retained_intron
ENSMUST00000139180 (Gcdh-004) 84890738-84893285 retained_intron
ENSMUST00000142748 (Gcdh-005) 84893094-84893921 protein_coding
ENSMUSG00000003824 (Syce2)
synaptonemal complex central element protein 2 		ENSMUST00000003922 (Syce2-002) 84872193-84887456 nonsense_mediated_decay
ENSMUST00000136026 (Syce2-001) 84872111-84888221 protein_coding
ENSMUST00000144466 (Syce2-003) 84872438-84886002 retained_intron
ENSMUST00000170296 (Syce2-201) 84872111-84887446 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LV_0001ENSDARG00000032750ENSDART00000033738ENSDARG00000058375ENSDART00000081244ENSDARG00000094702ENSDART00000135542CIL_0006LV_0002ENSMUSG00000003808ENSMUST00000003906ENSMUST00000109754ENSMUST00000129595ENSMUST00000141480ENSMUST00000144404ENSMUST00000156970ENSMUSG00000003809ENSMUST00000003907ENSMUST00000109745ENSMUST00000128023ENSMUST00000136462ENSMUST00000139180ENSMUST00000142748ENSMUSG00000003824ENSMUST00000003922ENSMUST00000136026ENSMUST00000144466ENSMUST00000170296
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006LV_0001ENSDARG00000032750ENSDART00000033738ENSDARG00000058375ENSDART00000081244ENSDARG00000094702ENSDART00000135542CIL_0006LV_0002ENSMUSG00000003808ENSMUST00000003906ENSMUST00000109754ENSMUST00000129595ENSMUST00000141480ENSMUST00000144404ENSMUST00000156970ENSMUSG00000003809ENSMUST00000003907ENSMUST00000109745ENSMUST00000128023ENSMUST00000139180ENSMUST00000142748ENSMUSG00000003824ENSMUST00000003922ENSMUST00000136026ENSMUST00000144466ENSMUST00000170296
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000032750 ENSDART00000033738 N/A N/A N/A 13.005±12.80 N/A N/A 16.784±14.11 14.558±10.49 7.959±0.00 N/A 18.375±0.00 N/A N/A N/A
ENSDARG00000058375 ENSDART00000081244 N/A N/A N/A 1.221±0.41 N/A N/A 2.723±0.05 6.114±2.26 0.096±0.00 N/A 0.151±0.00 N/A N/A N/A
ENSDARG00000094702 ENSDART00000135542 N/A N/A N/A 0.595±0.43 N/A N/A 0.135±0.00 0.159±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003808 ENSMUST00000003906 9.483±1.28 16.714±1.80 10.222±3.48 20.341±11.11 7.919±0.69 9.511±3.11 6.970±1.54 10.149±2.19 21.535±14.85 8.578±0.30 8.637±1.35 17.914±6.59 24.559±9.76 12.476±2.10
ENSMUST00000109754 N/A N/A N/A 4.974±0.00 N/A N/A N/A N/A N/A N/A N/A 23.572±0.00 21.045±6.72 10.473±5.46
ENSMUST00000129595 5.228±1.71 9.283±0.89 4.478±0.64 7.658±1.72 6.990±1.31 6.064±0.88 1.902±0.24 3.535±0.50 5.304±2.49 4.855±0.87 2.401±0.51 8.589±2.37 6.494±1.10 4.436±0.00
ENSMUST00000141480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.791±0.00 N/A
ENSMUST00000144404 3.189±0.03 N/A 1.833±0.18 4.533±0.48 2.743±0.77 1.633±0.00 1.139±0.15 N/A 1.308±0.00 2.388±0.08 0.796±0.06 N/A N/A N/A
ENSMUST00000156970 9.070±2.34 4.366±0.00 3.629±0.20 6.827±2.52 9.172±4.74 3.522±0.12 3.709±1.47 4.716±1.08 6.710±3.79 4.185±0.76 2.341±0.45 9.463±2.18 15.019±3.34 8.058±2.68
ENSMUSG00000003809 ENSMUST00000003907 12.408±0.84 16.430±5.57 5.140±0.73 9.811±0.92 11.860±2.04 11.070±2.49 5.879±2.62 129.701±14.16 125.533±103.82 7.239±0.35 5.677±0.84 9.931±5.25 5.219±2.67 1.701±0.24
ENSMUST00000109745 N/A 16.082±1.86 1.945±0.00 5.042±0.00 6.497±0.00 9.087±0.00 8.506±2.67 N/A 12.603±5.29 N/A 12.780±3.29 7.942±3.94 7.302±2.90 0.426±0.04
ENSMUST00000128023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.714±0.00
ENSMUST00000136462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.116±0.00 0.986±0.00
ENSMUST00000142748 39.059±3.72 294.979±41.65 N/A N/A 72.957±22.17 60.677±9.10 28.802±2.63 215.220±18.32 719.291±36.90 31.481±4.41 N/A 62.186±10.89 N/A 3.436±0.96
ENSMUSG00000003824 ENSMUST00000003922 0.482±0.39 0.350±0.16 1.002±0.21 3.423±2.19 0.719±0.25 0.585±0.12 0.251±0.05 1.382±0.73 6.694±4.71 0.567±0.20 0.287±0.15 1.800±1.46 16.993±4.11 44.685±31.15
ENSMUST00000136026 0.490±0.31 0.075±0.01 0.470±0.04 1.286±0.92 0.273±0.17 0.416±0.24 0.078±0.03 0.409±0.18 1.817±1.46 0.386±0.16 0.131±0.05 0.589±0.30 2.865±0.45 16.565±3.08
ENSMUST00000144466 0.212±0.00 0.277±0.19 N/A N/A 0.182±0.00 0.255±0.07 N/A N/A N/A 0.240±0.00 N/A 3.351±0.72 N/A N/A
ENSMUST00000170296 N/A 0.290±0.08 N/A 0.624±0.00 N/A 0.144±0.00 0.107±0.04 0.368±0.00 4.029±2.45 0.247±0.05 0.182±0.04 2.913±0.37 9.923±5.94 40.731±35.76

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