C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003863 Ppfia3 10090 - 7:45339126-45367019 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003961 Ppfia3-201 45339127-45367019 protein_coding
  ENSMUST00000107779 Ppfia3-001 45339126-45366714 protein_coding
  ENSMUST00000127948 Ppfia3-006 45339822-45341160 retained_intron
  ENSMUST00000130143 Ppfia3-004 45339127-45340771 processed_transcript
  ENSMUST00000131154 Ppfia3-002 45339273-45367019 retained_intron
  ENSMUST00000137578 Ppfia3-003 45339275-45360113 protein_coding
  ENSMUST00000151970 Ppfia3-005 45339281-45340762 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003961ENSMUST00000107779ENSMUST00000127948ENSMUST00000130143ENSMUST00000131154ENSMUST00000137578ENSMUST00000151970
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003961 0.150±0.06 0.346±0.14 N/A 7.365±0.03 0.070±0.02 N/A N/A N/A 0.041±0.00 0.021±0.00 0.033±0.00 0.281±0.07 0.042±0.00 N/A
ENSMUST00000107779 0.080±0.00 0.170±0.01 0.171±0.00 30.874±34.01 N/A N/A 0.017±0.00 0.015±0.00 N/A 0.190±0.15 0.119±0.02 0.373±0.00 0.211±0.00 0.175±0.00
ENSMUST00000127948 N/A N/A N/A N/A N/A N/A N/A 0.164±0.00 0.028±0.00 N/A 0.080±0.00 0.568±0.00 N/A 0.274±0.00
ENSMUST00000130143 0.239±0.00 0.624±0.14 N/A N/A 0.436±0.04 35.756±4.58 0.136±0.05 0.194±0.05 0.166±0.07 0.563±0.25 0.156±0.01 3.547±1.95 0.162±0.04 0.306±0.08
ENSMUST00000131154 0.091±0.00 0.184±0.06 N/A N/A N/A N/A N/A 0.029±0.01 0.032±0.00 0.026±0.00 N/A 0.239±0.09 N/A 0.025±0.00
ENSMUST00000137578 0.463±0.00 N/A 0.345±0.00 13.384±9.71 0.109±0.02 N/A 0.021±0.00 0.054±0.02 0.015±0.01 0.125±0.06 0.068±0.03 0.298±0.07 0.063±0.02 0.208±0.19
ENSMUST00000151970 N/A 0.508±0.00 N/A N/A 0.287±0.21 16.475±4.39 N/A N/A 0.054±0.03 N/A N/A 1.143±0.75 0.384±0.00 0.146±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077053 ppfia3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 protein_coding Danio_rerio
ENSG00000177380 PPFIA3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 protein_coding Homo_sapiens

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