C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107779 Ppfia3-001 ENSMUSG00000003863 10090 - 7:45339126-45366714 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000107779
Transcript ID Adipose Adrenal Bladder Brain Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000107779 0.080±0.00 0.170±0.01 0.171±0.00 30.874±34.01 0.017±0.00 0.015±0.00 0.190±0.15 0.119±0.02 0.373±0.00 0.211±0.00 0.175±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000153562 ppfia3-001 protein_coding Danio_rerio 0 361
ENSDART00000109953 ppfia3-201 protein_coding Danio_rerio 2e-30 139
ENST00000295706 PPFIA4-201 protein_coding Homo_sapiens 0 322
ENST00000334186 PPFIA3-001 protein_coding Homo_sapiens 0 4575
ENST00000367240 PPFIA4-001 protein_coding Homo_sapiens 0 355
ENST00000421230 PPFIA3-005 retained_intron Homo_sapiens 0 1949
ENST00000447715 PPFIA4-005 protein_coding Homo_sapiens 0 322
ENST00000600426 PPFIA4-004 protein_coding Homo_sapiens 0 361
ENST00000602351 PPFIA3-006 protein_coding Homo_sapiens 0 4327
ENST00000602492 PPFIA3-010 retained_intron Homo_sapiens 0 411
ENST00000602509 PPFIA3-003 protein_coding Homo_sapiens 0 647
ENST00000602655 PPFIA3-002 nonsense_mediated_decay Homo_sapiens 0 2420
ENST00000602716 PPFIA3-004 retained_intron Homo_sapiens 0 1951
ENST00000602726 PPFIA3-012 retained_intron Homo_sapiens 0 645
ENST00000602783 PPFIA3-009 retained_intron Homo_sapiens 0 531
ENST00000602800 PPFIA3-011 retained_intron Homo_sapiens 2e-27 126
ENST00000602848 PPFIA3-007 protein_coding Homo_sapiens 0 946
ENST00000602897 PPFIA3-008 protein_coding Homo_sapiens 0 913
ENST00000602905 PPFIA3-013 retained_intron Homo_sapiens 0 721

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