C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137578 Ppfia3-003 ENSMUSG00000003863 10090 - 7:45339275-45360113 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000137578
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000137578 0.463±0.00 0.345±0.00 13.384±9.71 0.109±0.02 0.021±0.00 0.054±0.02 0.015±0.01 0.125±0.06 0.068±0.03 0.298±0.07 0.063±0.02 0.208±0.19

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0048786 IEA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109953 ppfia3-201 protein_coding Danio_rerio 2e-20 106
ENSDART00000153562 ppfia3-001 protein_coding Danio_rerio 2e-20 106
ENST00000295706 PPFIA4-201 protein_coding Homo_sapiens 0 322
ENST00000334186 PPFIA3-001 protein_coding Homo_sapiens 0 4135
ENST00000367240 PPFIA4-001 protein_coding Homo_sapiens 0 355
ENST00000421230 PPFIA3-005 retained_intron Homo_sapiens 0 1688
ENST00000447715 PPFIA4-005 protein_coding Homo_sapiens 0 322
ENST00000600426 PPFIA4-004 protein_coding Homo_sapiens 0 361
ENST00000602351 PPFIA3-006 protein_coding Homo_sapiens 0 4309
ENST00000602492 PPFIA3-010 retained_intron Homo_sapiens 2e-34 150
ENST00000602655 PPFIA3-002 nonsense_mediated_decay Homo_sapiens 0 1773
ENST00000602716 PPFIA3-004 retained_intron Homo_sapiens 0 1690
ENST00000602726 PPFIA3-012 retained_intron Homo_sapiens 0 527
ENST00000602783 PPFIA3-009 retained_intron Homo_sapiens 0 531
ENST00000602800 PPFIA3-011 retained_intron Homo_sapiens 0.0000000000002 81
ENST00000602848 PPFIA3-007 protein_coding Homo_sapiens 0 1491
ENST00000602897 PPFIA3-008 protein_coding Homo_sapiens 0 913
ENST00000602905 PPFIA3-013 retained_intron Homo_sapiens 0 721

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