C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000177380 PPFIA3 9606 + 19:49119389-49151026 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334186 PPFIA3-001 49119389-49151021 protein_coding
  ENST00000421230 PPFIA3-005 49128327-49142918 retained_intron
  ENST00000602351 PPFIA3-006 49127874-49151026 protein_coding
  ENST00000602492 PPFIA3-010 49128020-49130428 retained_intron
  ENST00000602509 PPFIA3-003 49125351-49128945 protein_coding
  ENST00000602655 PPFIA3-002 49119664-49150279 nonsense_mediated_decay
  ENST00000602716 PPFIA3-004 49128289-49137240 retained_intron
  ENST00000602726 PPFIA3-012 49128580-49130599 retained_intron
  ENST00000602783 PPFIA3-009 49149958-49151021 retained_intron
  ENST00000602800 PPFIA3-011 49145687-49146408 retained_intron
  ENST00000602848 PPFIA3-007 49142984-49151026 protein_coding
  ENST00000602897 PPFIA3-008 49148101-49151021 protein_coding
  ENST00000602905 PPFIA3-013 49148573-49150354 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334186ENST00000421230ENST00000602351ENST00000602655ENST00000602716ENST00000602726ENST00000602783ENST00000602800ENST00000602897ENST00000602905
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334186 N/A N/A N/A 8.971±0.00 N/A 0.791±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421230 N/A N/A N/A N/A 0.152±0.00 0.173±0.00 N/A 0.045±0.00 0.209±0.00 0.133±0.00 0.133±0.00 0.872±0.77 0.312±0.00 N/A
ENST00000602351 0.134±0.00 0.475±0.00 N/A 7.492±0.00 0.271±0.00 N/A 0.016±0.00 0.571±0.00 0.070±0.00 N/A N/A 0.878±0.75 0.250±0.00 1.147±0.47
ENST00000602655 N/A N/A N/A 8.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 N/A
ENST00000602716 N/A N/A N/A N/A N/A 0.377±0.00 N/A N/A N/A N/A N/A 0.558±0.00 N/A 0.741±0.00
ENST00000602726 N/A N/A 0.305±0.00 N/A 0.710±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602783 1.205±0.00 3.749±0.00 1.016±0.00 N/A 1.977±0.00 4.258±0.00 0.907±0.00 1.434±0.61 1.471±0.00 4.235±3.98 N/A 2.316±0.15 4.842±1.71 3.062±0.00
ENST00000602800 N/A N/A N/A N/A N/A N/A 0.323±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000602897 N/A 2.132±0.00 N/A N/A 0.370±0.00 1.602±0.00 0.247±0.00 1.221±0.00 0.326±0.00 3.716±0.00 1.192±0.00 1.870±0.47 0.653±0.00 N/A
ENST00000602905 1.560±0.00 3.747±0.00 N/A N/A N/A 1.493±0.00 0.965±0.65 N/A N/A N/A 0.481±0.00 1.926±0.15 2.572±0.00 1.717±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0007269 ISS neurotransmitter secretion
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity
GO:0048786 IEA:TAS presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077053 ppfia3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 protein_coding Danio_rerio
ENSMUSG00000003863 Ppfia3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 protein_coding Mus_musculus

Loading