C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type V, alpha 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004098 Col5a3 10090 - 9:20770050-20815067 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004201 Col5a3-001 20770050-20815067 protein_coding
  ENSMUST00000145974 Col5a3-002 20782794-20815067 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004201ENSMUST00000145974
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004201 79.552±61.08 44.439±8.12 5.677±0.22 0.410±0.36 31.934±4.13 5.100±0.62 5.028±0.49 1.022±0.38 0.843±0.91 1.902±0.35 4.717±1.21 4.610±2.04 1.323±0.57 0.276±0.10
ENSMUST00000145974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.355±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000784 CIL_000784_0002 CGP 9:20667986-20815067
CIL_00077H CIL_00077H_0003 CGP 9:20770050-20826163

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 ISS structural molecule activity
GO:0005201 IEA extracellular matrix structural constituent
GO:0005588 IDA collagen type V trimer
GO:0007160 IDA cell-matrix adhesion
GO:0008201 IDA heparin binding
GO:0030198 ISS extracellular matrix organization
GO:0031012 IEA extracellular matrix
GO:0043394 IEA proteoglycan binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017360 col5a3a collagen, type V, alpha 3a protein_coding Danio_rerio
ENSDARG00000028524 col5a3b collagen, type V, alpha 3b protein_coding Danio_rerio
ENSG00000080573 COL5A3 collagen, type V, alpha 3 protein_coding Homo_sapiens

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