C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000784_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105088-ENSG00000080573 CGP 9606 19:9853718-10010471
GeneTranscriptPositionBiotype
ENSG00000080573 (COL5A3)
collagen, type V, alpha 3 		ENST00000264828 (COL5A3-001) 9959561-10010471 protein_coding
ENST00000461214 (COL5A3-002) 9967573-9968887 retained_intron
ENSG00000105088 (OLFM2)
olfactomedin 2 		ENST00000264833 (OLFM2-001) 9853718-9936552 protein_coding
ENST00000590410 (OLFM2-004) 9857208-9936324 retained_intron
ENST00000590841 (OLFM2-002) 9853745-9858168 protein_coding
ENST00000592448 (OLFM2-003) 9854551-9858146 nonsense_mediated_decay
ENST00000593091 (OLFM2-005) 9854616-9913836 protein_coding
CIL_000784_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032172-ENSMUSG00000004098 CGP 10090 9:20667986-20815067
GeneTranscriptPositionBiotype
ENSMUSG00000004098 (Col5a3)
collagen, type V, alpha 3 		ENSMUST00000004201 (Col5a3-001) 20770050-20815067 protein_coding
ENSMUST00000145974 (Col5a3-002) 20782794-20815067 retained_intron
ENSMUSG00000032172 (Olfm2)
olfactomedin 2 		ENSMUST00000034692 (Olfm2-201) 20667986-20728219 protein_coding
ENSMUSG00000087728 (Gm26274)
predicted gene, 26274 		ENSMUST00000157103 (Gm26274-201) 20807034-20807354 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000784_0001ENSG00000080573ENST00000264828ENST00000461214ENSG00000105088ENST00000264833ENST00000590410ENST00000590841ENST00000592448ENST00000593091CIL_000784_0002ENSMUSG00000004098ENSMUST00000004201ENSMUST00000145974ENSMUSG00000032172ENSMUST00000034692ENSMUSG00000087728ENSMUST00000157103
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000784_0001ENSG00000080573ENST00000264828ENSG00000105088ENST00000264833ENST00000590410ENST00000590841ENST00000593091CIL_000784_0002ENSMUSG00000004098ENSMUST00000004201ENSMUST00000145974ENSMUSG00000032172ENSMUST00000034692ENSMUSG00000087728ENSMUST00000157103
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080573 ENST00000264828 8.220±0.00 2.963±0.00 0.243±0.00 0.822±0.00 29.122±0.00 2.393±1.79 2.161±0.00 0.433±0.37 0.639±0.30 2.120±1.66 0.623±0.48 2.567±1.95 16.815±3.98 2.928±0.54
ENST00000461214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000105088 ENST00000264833 17.374±0.00 5.003±0.00 N/A 23.008±18.64 22.593±22.28 1.853±0.00 0.817±0.00 0.222±0.00 2.791±1.93 2.569±1.47 N/A 9.506±8.51 8.414±0.68 9.041±1.61
ENST00000590410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.297±0.00 0.124±0.00 N/A N/A
ENST00000590841 N/A 2.483±0.00 0.661±0.00 2.762±0.00 N/A 1.655±1.53 N/A 0.899±0.00 3.447±0.00 N/A 0.416±0.00 2.280±0.00 N/A 2.814±0.00
ENST00000592448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593091 N/A N/A N/A N/A 0.260±0.00 N/A N/A 0.469±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004098 ENSMUST00000004201 79.552±61.08 44.439±8.12 5.677±0.22 0.410±0.36 31.934±4.13 5.100±0.62 5.028±0.49 1.022±0.38 0.843±0.91 1.902±0.35 4.717±1.21 4.610±2.04 1.323±0.57 0.276±0.10
ENSMUST00000145974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.355±0.00 N/A N/A
ENSMUSG00000032172 ENSMUST00000034692 2.763±2.07 0.989±0.52 1.739±0.00 28.354±0.00 1.815±1.26 1.461±0.41 0.128±0.03 0.991±0.10 0.141±0.13 6.223±1.83 0.054±0.02 7.625±4.77 0.390±0.42 0.707±0.35
ENSMUSG00000087728 ENSMUST00000157103 0.554±0.09 0.359±0.00 N/A N/A 0.555±0.05 0.377±0.00 0.193±0.00 N/A N/A N/A N/A 0.266±0.00 0.032±0.00 N/A

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