C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hypoxia inducible factor 3, alpha subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004328 Hif3a 10090 - 7:17031507-17062427 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037762 Hif3a-001 17035734-17056679 protein_coding
  ENSMUST00000108492 Hif3a-002 17031507-17062427 protein_coding
  ENSMUST00000139224 Hif3a-004 17048848-17050663 processed_transcript
  ENSMUST00000153833 Hif3a-003 17051954-17062384 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037762ENSMUST00000108492ENSMUST00000139224
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037762 N/A 0.487±0.15 N/A N/A 0.173±0.00 0.997±0.10 0.278±0.00 N/A 0.030±0.01 0.225±0.00 0.059±0.00 0.369±0.04 N/A N/A
ENSMUST00000108492 0.179±0.11 0.473±0.19 0.575±0.13 1.321±1.09 0.255±0.04 1.258±0.57 0.231±0.13 0.086±0.06 3.666±4.43 0.898±0.54 0.231±0.13 0.559±0.23 2.752±0.94 0.431±0.00
ENSMUST00000139224 N/A N/A N/A N/A N/A N/A N/A 0.824±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001666 IDA response to hypoxia
GO:0003677 IPI DNA binding
GO:0003700 IPI sequence-specific DNA binding transcription factor activity
GO:0003713 ISS transcription coactivator activity
GO:0003714 ISS transcription corepressor activity
GO:0004871 IEA signal transducer activity
GO:0005634 IC nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IPI transcription from RNA polymerase II promoter
GO:0007165 IEA signal transduction
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041169 hif1al hypoxia-inducible factor 1, alpha subunit, like protein_coding Danio_rerio
ENSG00000124440 HIF3A hypoxia inducible factor 3, alpha subunit protein_coding Homo_sapiens

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