C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hypoxia inducible factor 3, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037762 Hif3a-001 ENSMUSG00000004328 10090 - 7:17035734-17056679 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartLiverLungMuscleOvaryENSMUST00000037762
Transcript ID Adrenal Breast Colon Heart Liver Lung Muscle Ovary
ENSMUST00000037762 0.487±0.15 0.173±0.00 0.997±0.10 0.278±0.00 0.030±0.01 0.225±0.00 0.059±0.00 0.369±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IDA response to hypoxia
GO:0003677 IPI DNA binding
GO:0003700 IPI sequence-specific DNA binding transcription factor activity
GO:0003713 ISS transcription coactivator activity
GO:0003714 ISS transcription corepressor activity
GO:0004871 IEA signal transducer activity
GO:0005634 IC nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IPI transcription from RNA polymerase II promoter
GO:0007165 IEA signal transduction
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244302 HIF3A-001 retained_intron Homo_sapiens 0 1853
ENST00000244303 HIF3A-007 protein_coding Homo_sapiens 0 1478
ENST00000291300 HIF3A-009 retained_intron Homo_sapiens 0 1851
ENST00000300862 HIF3A-006 protein_coding Homo_sapiens 0 1973
ENST00000377670 HIF3A-003 protein_coding Homo_sapiens 0 1965
ENST00000472815 HIF3A-004 protein_coding Homo_sapiens 0 272
ENST00000475432 HIF3A-002 retained_intron Homo_sapiens 0 1096
ENST00000524533 HIF3A-011 retained_intron Homo_sapiens 0 276
ENST00000525854 HIF3A-013 processed_transcript Homo_sapiens 0 841
ENST00000526506 HIF3A-014 nonsense_mediated_decay Homo_sapiens 0 608
ENST00000528563 HIF3A-018 nonsense_mediated_decay Homo_sapiens 0 1511
ENST00000529205 HIF3A-015 retained_intron Homo_sapiens 0 503
ENST00000529542 HIF3A-017 retained_intron Homo_sapiens 0 311
ENST00000533145 HIF3A-012 protein_coding Homo_sapiens 0 346
ENST00000533789 HIF3A-010 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000600383 HIF3A-023 protein_coding Homo_sapiens 0 1402
ENST00000600879 HIF3A-024 nonsense_mediated_decay Homo_sapiens 0 691

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