C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hypoxia inducible factor 3, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108492 Hif3a-002 ENSMUSG00000004328 10090 - 7:17031507-17062427 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108492
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108492 0.179±0.11 0.473±0.19 0.575±0.13 1.321±1.09 0.255±0.04 1.258±0.57 0.231±0.13 0.086±0.06 3.666±4.43 0.898±0.54 0.231±0.13 0.559±0.23 2.752±0.94 0.431±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IDA response to hypoxia
GO:0003677 IPI DNA binding
GO:0003700 IPI sequence-specific DNA binding transcription factor activity
GO:0003713 IEA transcription coactivator activity
GO:0003714 IEA transcription corepressor activity
GO:0004871 IEA signal transducer activity
GO:0005634 IC nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IPI transcription from RNA polymerase II promoter
GO:0007165 IEA signal transduction
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243344 TTC21B-001 protein_coding Homo_sapiens 0.0001 55
ENST00000244302 HIF3A-001 retained_intron Homo_sapiens 0 1908
ENST00000244303 HIF3A-007 protein_coding Homo_sapiens 0 1507
ENST00000251250 DTWD1-001 protein_coding Homo_sapiens 0.000005 60
ENST00000291300 HIF3A-009 retained_intron Homo_sapiens 0 1851
ENST00000300862 HIF3A-006 protein_coding Homo_sapiens 0 2028
ENST00000312239 HP1BP3-001 protein_coding Homo_sapiens 0.0000004 62
ENST00000322153 IL12RB1-003 protein_coding Homo_sapiens 0.00000006 64
ENST00000338148 MRPL30-001 protein_coding Homo_sapiens 0.000004 58
ENST00000370823 MTG2-008 protein_coding Homo_sapiens 0.00001 57
ENST00000372037 BMPR1A-001 protein_coding Homo_sapiens 0.0000003 64
ENST00000374045 TNFSF15-001 protein_coding Homo_sapiens 0.000009 58
ENST00000375003 HP1BP3-004 protein_coding Homo_sapiens 0.0000005 62
ENST00000377670 HIF3A-003 protein_coding Homo_sapiens 0 2084
ENST00000396556 OSBPL10-001 protein_coding Homo_sapiens 0.0000002 64
ENST00000407325 GPR1-001 protein_coding Homo_sapiens 0.0001 53
ENST00000429492 OSBPL10-002 protein_coding Homo_sapiens 0.0000002 64
ENST00000434410 HEMK1-001 protein_coding Homo_sapiens 0.000002 62
ENST00000439326 ZNF844-001 protein_coding Homo_sapiens 0.000009 58
ENST00000443035 DENND4A-001 protein_coding Homo_sapiens 0.00004 57
ENST00000449697 TRIM16L-010 processed_transcript Homo_sapiens 0.000001 58
ENST00000465432 MRPL30-002 processed_transcript Homo_sapiens 0.000002 58
ENST00000467101 MTG2-002 nonsense_mediated_decay Homo_sapiens 0.00001 57
ENST00000468599 CNOT10-015 retained_intron Homo_sapiens 0.000004 57
ENST00000469023 ATP1A4-003 retained_intron Homo_sapiens 0.0000001 64
ENST00000472815 HIF3A-004 protein_coding Homo_sapiens 0 272
ENST00000474136 APP-013 processed_transcript Homo_sapiens 0.00002 55
ENST00000475432 HIF3A-002 retained_intron Homo_sapiens 0 1151
ENST00000477671 DNAJB4-006 processed_transcript Homo_sapiens 0.00000002 64
ENST00000493652 RBM6-013 retained_intron Homo_sapiens 0.0000008 58
ENST00000504763 ARSK-003 protein_coding Homo_sapiens 0.000002 58
ENST00000512931 C4orf22-005 processed_transcript Homo_sapiens 0.00000002 64
ENST00000513816 RAPGEF2-002 retained_intron Homo_sapiens 0.000005 58
ENST00000513920 C4orf22-002 nonsense_mediated_decay Homo_sapiens 0.0000001 64
ENST00000523490 MATN2-003 retained_intron Homo_sapiens 0.000003 58
ENST00000524533 HIF3A-011 retained_intron Homo_sapiens 0 276
ENST00000525854 HIF3A-013 processed_transcript Homo_sapiens 0 841
ENST00000526506 HIF3A-014 nonsense_mediated_decay Homo_sapiens 0 608
ENST00000528426 CHID1-010 nonsense_mediated_decay Homo_sapiens 0.00002 55
ENST00000528563 HIF3A-018 nonsense_mediated_decay Homo_sapiens 0 1511
ENST00000529205 HIF3A-015 retained_intron Homo_sapiens 0 503
ENST00000529542 HIF3A-017 retained_intron Homo_sapiens 0 311
ENST00000533145 HIF3A-012 protein_coding Homo_sapiens 0 346
ENST00000533499 NXF1-007 retained_intron Homo_sapiens 0.000005 57
ENST00000533789 HIF3A-010 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000533965 ZNF517-011 nonsense_mediated_decay Homo_sapiens 0.00000008 64
ENST00000552461 RPLP0-004 retained_intron Homo_sapiens 0.0000003 62
ENST00000557781 STAT6-016 retained_intron Homo_sapiens 0.00003 55
ENST00000583950 SUZ12P1-007 processed_transcript Homo_sapiens 0.000001 58
ENST00000600383 HIF3A-023 protein_coding Homo_sapiens 0 1402
ENST00000600879 HIF3A-024 nonsense_mediated_decay Homo_sapiens 0 689
ENST00000602490 ARPC5-005 retained_intron Homo_sapiens 0.000004 58
ENST00000609923 SLC25A16-002 protein_coding Homo_sapiens 0.0004 53
ENST00000612892 GPR1-201 protein_coding Homo_sapiens 0.0002 53
ENST00000621141 GPR1-202 protein_coding Homo_sapiens 0.0001 53
ENST00000621663 ANAPC16-202 protein_coding Homo_sapiens 0.0000001 64
ENST00000623232 RP11-286N22.8-008 TEC Homo_sapiens 0.0000002 64

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