C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008Z6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2306 VISTA 9606 7:18529093-19130782
GeneTranscriptPositionBiotype
ENSG00000122691 (TWIST1)
twist family bHLH transcription factor 1 		ENST00000242261 (TWIST1-001) 19115468-19117672 protein_coding
ENST00000354571 (TWIST1-003) 19113047-19117118 nonsense_mediated_decay
ENST00000443687 (TWIST1-002) 19020991-19116924 nonsense_mediated_decay
ENSG00000222164 (RN7SKP266)
RNA, 7SK small nuclear pseudogene 266 		ENST00000410232 (RN7SKP266-201) 18807993-18808279 misc_RNA
ENSG00000226522 (AC004744.3)
 ENST00000447057 (AC004744.3-001) 18892096-18899433 antisense
ENSG00000232492 (NPM1P13)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 13 		ENST00000452663 (NPM1P13-001) 18948898-18949762 processed_pseudogene
ENSG00000232821 (AC003986.6)
 ENST00000419944 (AC003986.6-001) 19112474-19114271 antisense
ENSG00000236536 (AC003986.7)
 ENST00000417460 (AC003986.7-001) 19119933-19121916 antisense
CIL_0008Z6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2306 VISTA 10090 12:33919670-34521315
GeneTranscriptPositionBiotype
ENSMUSG00000004698 (Hdac9)
histone deacetylase 9 		ENSMUST00000110819 (Hdac9-201) 34371503-34528889 protein_coding
ENSMUSG00000035799 (Twist1)
twist basic helix-loop-helix transcription factor 1 		ENSMUST00000049089 (Twist1-201) 33957671-33959817 protein_coding
ENSMUSG00000046518 (Ferd3l)
Fer3-like (Drosophila) 		ENSMUST00000061035 (Ferd3l-201) 33928425-33929310 protein_coding
ENSMUSG00000095406 (Gm18025)
predicted gene, 18025 		ENSMUST00000166546 (Gm18025-201) 34290274-34291092 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008Z6_0001ENSG00000122691ENST00000242261ENST00000354571ENST00000443687ENSG00000222164ENST00000410232ENSG00000226522ENST00000447057ENSG00000232492ENST00000452663ENSG00000232821ENST00000419944ENSG00000236536ENST00000417460CIL_0008Z6_0002ENSMUSG00000004698ENSMUST00000110819ENSMUSG00000035799ENSMUST00000049089ENSMUSG00000046518ENSMUST00000061035ENSMUSG00000095406ENSMUST00000166546
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008Z6_0001ENSG00000122691ENST00000242261ENST00000354571ENST00000443687ENSG00000222164ENST00000410232ENSG00000226522ENST00000447057ENSG00000232492ENST00000452663ENSG00000232821ENST00000419944ENSG00000236536ENST00000417460CIL_0008Z6_0002ENSMUSG00000004698ENSMUST00000110819ENSMUSG00000035799ENSMUST00000049089ENSMUSG00000046518ENSMUST00000061035ENSMUSG00000095406ENSMUST00000166546
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122691 ENST00000242261 11.547±0.00 0.762±0.00 N/A 0.407±0.02 4.370±2.40 1.840±1.68 0.392±0.34 0.118±0.00 2.880±0.00 0.904±0.79 0.826±0.00 2.670±1.72 7.523±2.31 3.895±2.16
ENST00000354571 N/A 1.109±0.00 N/A N/A 10.545±0.00 N/A N/A 0.194±0.00 N/A N/A N/A N/A N/A N/A
ENST00000443687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.218±0.00 N/A
ENSG00000222164 ENST00000410232 N/A N/A N/A N/A N/A N/A 0.259±0.21 N/A N/A N/A N/A N/A N/A N/A
ENSG00000226522 ENST00000447057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.176±0.00
ENSG00000232492 ENST00000452663 N/A N/A N/A 0.024±0.00 0.021±0.01 N/A N/A 0.023±0.01 N/A N/A N/A N/A N/A N/A
ENSG00000232821 ENST00000419944 N/A N/A N/A 0.033±0.00 1.129±0.00 N/A N/A 0.036±0.00 0.261±0.00 N/A N/A N/A N/A N/A
ENSG00000236536 ENST00000417460 0.063±0.00 0.085±0.00 N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A 0.211±0.18 N/A 0.059±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004698 ENSMUST00000110819 1.199±0.26 0.138±0.07 0.223±0.00 1.605±0.47 0.822±0.59 0.837±0.14 1.673±0.67 0.316±0.04 0.270±0.26 0.488±0.03 0.417±0.10 0.949±0.34 0.427±0.00 0.556±0.22
ENSMUSG00000035799 ENSMUST00000049089 13.967±1.50 7.715±3.79 5.103±1.08 3.986±2.55 18.911±8.86 3.941±0.37 1.162±0.16 0.977±0.36 0.317±0.28 0.515±0.13 0.554±0.14 16.187±6.50 2.235±1.71 0.622±0.10
ENSMUSG00000046518 ENSMUST00000061035 N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.079±0.00
ENSMUSG00000095406 ENSMUST00000166546 0.047±0.01 0.105±0.03 0.066±0.04 0.118±0.08 0.169±0.07 0.080±0.00 0.067±0.02 0.100±0.03 0.058±0.04 0.054±0.01 0.091±0.01 0.147±0.11 0.057±0.04 0.043±0.00

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