C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110819 Hdac9-201 ENSMUSG00000004698 10090 - 12:34371503-34528889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110819
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110819 1.199±0.26 0.138±0.07 0.223±0.00 1.605±0.47 0.822±0.59 0.837±0.14 1.673±0.67 0.316±0.04 0.270±0.26 0.488±0.03 0.417±0.10 0.949±0.34 0.427±0.00 0.556±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LO CIL_0007LO_0002 UCNEbase 12:33675251-34394390
CIL_0008A9 CIL_0008A9_0002 VISTA 12:33899630-34500876
CIL_0008Z7 CIL_0008Z7_0002 VISTA 12:33915261-34516362
CIL_0008Z6 CIL_0008Z6_0002 VISTA 12:33919670-34521315

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IDA transcription corepressor activity
GO:0004407 TAS histone deacetylase activity
GO:0005080 IEA protein kinase C binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 TAS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006954 TAS inflammatory response
GO:0007399 TAS nervous system development
GO:0007507 IGI heart development
GO:0008134 TAS transcription factor binding
GO:0016568 TAS chromatin modification
GO:0016575 IEA histone deacetylation
GO:0030183 TAS B cell differentiation
GO:0032869 IEA cellular response to insulin stimulus
GO:0033558 IEA protein deacetylase activity
GO:0034983 IEA peptidyl-lysine deacetylation
GO:0035097 IDA histone methyltransferase complex
GO:0042113 TAS B cell activation
GO:0042826 IEA histone deacetylase binding
GO:0045843 TAS negative regulation of striated muscle tissue development
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048742 IGI regulation of skeletal muscle fiber development
GO:0051153 IGI regulation of striated muscle cell differentiation
GO:0070491 IPI repressing transcription factor binding
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0090050 IEA positive regulation of cell migration involved in sprouting angiogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000036277 hdac4-201 protein_coding Danio_rerio 0.0000000008 71
ENSDART00000124870 hdac4-001 protein_coding Danio_rerio 0.0000000008 71
ENST00000225983 HDAC5-003 protein_coding Homo_sapiens 0.000000001 71
ENST00000336057 HDAC5-001 protein_coding Homo_sapiens 0.0000000009 71
ENST00000401921 HDAC9-017 protein_coding Homo_sapiens 0 1081
ENST00000405010 HDAC9-002 protein_coding Homo_sapiens 0 2543
ENST00000406072 HDAC9-004 protein_coding Homo_sapiens 0 1759
ENST00000406451 HDAC9-001 protein_coding Homo_sapiens 0 2292
ENST00000413380 HDAC9-011 protein_coding Homo_sapiens 0 815
ENST00000413509 HDAC9-008 protein_coding Homo_sapiens 0 603
ENST00000417496 HDAC9-005 protein_coding Homo_sapiens 0 1266
ENST00000428307 HDAC9-025 protein_coding Homo_sapiens 0 1332
ENST00000430454 HDAC9-010 protein_coding Homo_sapiens 0 303
ENST00000432645 HDAC9-023 protein_coding Homo_sapiens 0 2228
ENST00000433709 HDAC9-006 protein_coding Homo_sapiens 1e-39 167
ENST00000441542 HDAC9-021 protein_coding Homo_sapiens 0 2191
ENST00000441986 HDAC9-013 protein_coding Homo_sapiens 0 573
ENST00000446646 HDAC9-012 nonsense_mediated_decay Homo_sapiens 0 584
ENST00000456174 HDAC9-015 protein_coding Homo_sapiens 0 2337
ENST00000461159 HDAC9-016 retained_intron Homo_sapiens 0 1081
ENST00000461409 HDAC9-009 processed_transcript Homo_sapiens 0 265
ENST00000474742 HDAC9-007 processed_transcript Homo_sapiens 3e-20 102
ENST00000476135 HDAC9-003 processed_transcript Homo_sapiens 0 296
ENST00000523867 HDAC9-024 retained_intron Homo_sapiens 0 2228
ENST00000524023 HDAC9-022 protein_coding Homo_sapiens 0 1306
ENST00000586802 HDAC5-002 protein_coding Homo_sapiens 0.0000000007 71
ENST00000592385 HDAC5-004 retained_intron Homo_sapiens 0.0000000005 71
ENST00000622668 HDAC9-201 protein_coding Homo_sapiens 0 1759

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