C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB23, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004768 Rab23 10090 + 1:33719887-33742564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000088287 Rab23-001 33719887-33742564 protein_coding
  ENSMUST00000115174 Rab23-003 33720407-33742557 protein_coding
  ENSMUST00000122822 Rab23-008 33736657-33739370 retained_intron
  ENSMUST00000132066 Rab23-009 33738137-33742557 retained_intron
  ENSMUST00000135330 Rab23-005 33719910-33725476 retained_intron
  ENSMUST00000138024 Rab23-002 33719909-33742557 nonsense_mediated_decay
  ENSMUST00000140354 Rab23-004 33719887-33726891 retained_intron
  ENSMUST00000150593 Rab23-007 33734528-33739458 retained_intron
  ENSMUST00000151482 Rab23-006 33720138-33735354 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088287ENSMUST00000115174ENSMUST00000132066ENSMUST00000138024ENSMUST00000150593ENSMUST00000151482
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088287 3.914±2.39 1.849±0.92 4.510±0.01 4.399±1.35 1.337±0.92 4.690±0.60 1.743±0.24 1.898±0.58 1.037±0.56 4.184±0.63 0.913±0.16 2.480±1.22 3.454±0.94 2.178±0.22
ENSMUST00000115174 N/A N/A N/A N/A 0.347±0.00 N/A N/A N/A N/A N/A 0.260±0.00 3.409±0.09 N/A N/A
ENSMUST00000132066 1.539±0.23 2.196±0.72 N/A 1.346±0.00 1.561±0.34 1.441±0.18 N/A 0.839±0.36 0.793±0.42 1.805±0.00 0.275±0.08 2.910±1.46 N/A 2.860±0.27
ENSMUST00000138024 N/A N/A N/A N/A 0.505±0.00 N/A N/A 0.337±0.00 N/A N/A 0.241±0.00 N/A N/A N/A
ENSMUST00000150593 N/A N/A N/A 8.717±0.00 N/A N/A N/A N/A N/A N/A N/A 8.407±0.00 8.532±0.00 N/A
ENSMUST00000151482 N/A N/A N/A 4.275±0.00 N/A N/A N/A N/A N/A N/A N/A 4.254±0.00 3.462±0.12 2.596±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087X CIL_00087X_0002 VISTA 1:33689736-34292240
CIL_0002SR CIL_0002SR_0002 CGP 1:33719887-33757795

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IEA autophagic vacuole assembly
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005776 IEA autophagic vacuole
GO:0005886 IEA plasma membrane
GO:0006968 IEA cellular defense response
GO:0007165 IMP signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007399 IMP nervous system development
GO:0008589 IGI regulation of smoothened signaling pathway
GO:0015031 IEA protein transport
GO:0021513 IGI spinal cord dorsal/ventral patterning
GO:0042384 IEA cilium assembly
GO:0042733 IMP embryonic digit morphogenesis
GO:0042992 IEA negative regulation of transcription factor import into nucleus
GO:0045335 IEA phagocytic vesicle
GO:0045861 IMP negative regulation of proteolysis
GO:0070062 IEA extracellular vesicular exosome
GO:0097094 IEA craniofacial suture morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004151 rab23 RAB23, member RAS oncogene family protein_coding Danio_rerio
ENSG00000112210 RAB23 RAB23, member RAS oncogene family protein_coding Homo_sapiens

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