C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB23, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088287 Rab23-001 ENSMUSG00000004768 10090 + 1:33719887-33742564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088287
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088287 3.914±2.39 1.849±0.92 4.510±0.01 4.399±1.35 1.337±0.92 4.690±0.60 1.743±0.24 1.898±0.58 1.037±0.56 4.184±0.63 0.913±0.16 2.480±1.22 3.454±0.94 2.178±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087X CIL_00087X_0002 VISTA 1:33689736-34292240
CIL_0002SR CIL_0002SR_0002 CGP 1:33719887-33757795

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IEA autophagic vacuole assembly
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005776 IEA autophagic vacuole
GO:0005886 IEA plasma membrane
GO:0006968 IEA cellular defense response
GO:0007165 IMP signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007399 IMP nervous system development
GO:0008589 IGI regulation of smoothened signaling pathway
GO:0015031 IEA protein transport
GO:0021513 IGI spinal cord dorsal/ventral patterning
GO:0042384 IEA cilium assembly
GO:0042733 IMP embryonic digit morphogenesis
GO:0042992 IEA negative regulation of transcription factor import into nucleus
GO:0045335 IEA phagocytic vesicle
GO:0045861 IMP negative regulation of proteolysis
GO:0070062 IEA extracellular vesicular exosome
GO:0097094 IEA craniofacial suture morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317483 RAB23-001 protein_coding Homo_sapiens 0 837
ENST00000468148 RAB23-201 protein_coding Homo_sapiens 0 837

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