C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hepatoma-derived growth factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004897 Hdgf 10090 + 3:87906321-87916132 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005017 Hdgf-001 87906321-87916132 protein_coding
  ENSMUST00000159492 Hdgf-002 87906850-87914687 protein_coding
  ENSMUST00000160198 Hdgf-005 87910034-87914182 processed_transcript
  ENSMUST00000160312 Hdgf-006 87913961-87914777 retained_intron
  ENSMUST00000161616 Hdgf-004 87907534-87914166 processed_transcript
  ENSMUST00000162631 Hdgf-003 87907052-87914649 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005017ENSMUST00000159492ENSMUST00000160312ENSMUST00000161616ENSMUST00000162631
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005017 52.064±3.64 35.843±3.02 55.903±12.58 52.649±25.92 37.449±11.18 46.426±2.80 32.373±1.71 56.089±2.87 80.221±54.51 38.808±5.75 72.188±23.20 43.754±9.52 47.851±29.75 76.675±29.13
ENSMUST00000159492 N/A 16.631±1.33 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 194.143±0.00
ENSMUST00000160312 N/A N/A N/A 61.804±0.00 N/A N/A N/A N/A N/A N/A N/A 147.217±0.00 66.693±26.34 N/A
ENSMUST00000161616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 222.823±0.00 N/A
ENSMUST00000162631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 223.949±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008083 ISO growth factor activity
GO:0008201 IEA heparin binding
GO:0009987 IDA cellular process
GO:0034504 IEA protein localization to nucleus
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

No Homologs available.

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