C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hepatoma-derived growth factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162631 Hdgf-003 ENSMUSG00000004897 10090 + 3:87907052-87914649 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000162631
Transcript ID Testis
ENSMUST00000162631 223.949±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0008083 ISO growth factor activity
GO:0009987 IDA cellular process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357325 HDGF-001 protein_coding Homo_sapiens 0 353
ENST00000368206 HDGF-003 protein_coding Homo_sapiens 0 353
ENST00000368209 HDGF-002 protein_coding Homo_sapiens 0 355
ENST00000465180 HDGF-009 processed_transcript Homo_sapiens 0 353
ENST00000469145 HDGF-005 processed_transcript Homo_sapiens 0 811
ENST00000471377 HDGF-004 processed_transcript Homo_sapiens 0 721
ENST00000482651 HDGF-006 processed_transcript Homo_sapiens 0 353
ENST00000495212 HDGF-007 processed_transcript Homo_sapiens 0 237
ENST00000537739 HDGF-201 protein_coding Homo_sapiens 0 353

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