C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sedoheptulokinase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005951 Shpk 10090 + 11:73199460-73224511 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006105 Shpk-002 73199460-73224511 protein_coding
  ENSMUST00000131927 Shpk-001 73199460-73224502 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006105ENSMUST00000131927
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006105 5.483±1.33 7.085±0.48 5.928±0.20 0.742±0.19 6.677±1.05 6.112±0.98 0.703±0.15 8.653±1.10 14.059±11.56 1.162±0.47 0.260±0.04 1.829±0.64 1.954±1.28 0.654±0.26
ENSMUST00000131927 N/A 1.187±0.12 N/A 0.100±0.00 N/A N/A N/A N/A N/A 0.356±0.00 N/A 0.534±0.00 N/A 0.188±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031U CIL_00031U_0002 CGP 11:73199460-73261242

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005975 IDA carbohydrate metabolic process
GO:0009052 IDA pentose-phosphate shunt, non-oxidative branch
GO:0016310 IDA phosphorylation
GO:0035963 IDA cellular response to interleukin-13
GO:0043030 IDA regulation of macrophage activation
GO:0050277 IDA sedoheptulokinase activity
GO:0050727 IDA regulation of inflammatory response
GO:0071222 IDA cellular response to lipopolysaccharide
GO:0071353 IDA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002355 shpk sedoheptulokinase protein_coding Danio_rerio
ENSG00000197417 SHPK sedoheptulokinase protein_coding Homo_sapiens

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