C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sedoheptulokinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131927 Shpk-001 ENSMUSG00000005951 10090 + 11:73199460-73224502 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainLungOvaryTestisENSMUST00000131927
Transcript ID Adrenal Brain Lung Ovary Testis
ENSMUST00000131927 1.187±0.12 0.100±0.00 0.356±0.00 0.534±0.00 0.188±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031U CIL_00031U_0002 CGP 11:73199460-73261242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005975 IEA carbohydrate metabolic process
GO:0016310 IEA phosphorylation
GO:0050277 IEA sedoheptulokinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225519 SHPK-001 protein_coding Homo_sapiens 0 1168
ENST00000572919 TRPV1-001 nonsense_mediated_decay Homo_sapiens 0 1168

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