C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sedoheptulokinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006105 Shpk-002 ENSMUSG00000005951 10090 + 11:73199460-73224511 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006105
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006105 5.483±1.33 7.085±0.48 5.928±0.20 0.742±0.19 6.677±1.05 6.112±0.98 0.703±0.15 8.653±1.10 14.059±11.56 1.162±0.47 0.260±0.04 1.829±0.64 1.954±1.28 0.654±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031U CIL_00031U_0002 CGP 11:73199460-73261242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005975 IDA carbohydrate metabolic process
GO:0009052 IDA pentose-phosphate shunt, non-oxidative branch
GO:0016310 IDA phosphorylation
GO:0035963 IDA cellular response to interleukin-13
GO:0043030 IDA regulation of macrophage activation
GO:0050277 IDA sedoheptulokinase activity
GO:0050727 IDA regulation of inflammatory response
GO:0071222 IDA cellular response to lipopolysaccharide
GO:0071353 IDA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225519 SHPK-001 protein_coding Homo_sapiens 0 1522
ENST00000572919 TRPV1-001 nonsense_mediated_decay Homo_sapiens 0 1522

Loading