C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1700037C18 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005983 1700037C18Rik 10090 - 16:3895179-3908689 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006139 1700037C18Rik-002 3895181-3907757 nonsense_mediated_decay
  ENSMUST00000115859 1700037C18Rik-001 3904303-3908689 protein_coding
  ENSMUST00000123235 1700037C18Rik-003 3907013-3908623 protein_coding
  ENSMUST00000177221 1700037C18Rik-006 3906258-3907651 protein_coding
  ENSMUST00000177323 1700037C18Rik-005 3905798-3907702 protein_coding
  ENSMUST00000177519 1700037C18Rik-004 3895179-3908653 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006139ENSMUST00000115859ENSMUST00000177323
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 136.315±20.53
ENSMUST00000115859 8.720±1.72 8.690±0.62 8.004±0.71 6.722±0.66 6.566±0.30 10.591±1.57 5.956±1.44 8.876±1.43 4.559±0.51 7.229±0.88 8.048±0.00 N/A
ENSMUST00000177323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 94.993±17.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AU CIL_0000AU_0002 CGP 16:3858321-3904780
CIL_0005EX CIL_0005EX_0002 CGP 16:3895179-3941147

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000215131 C16orf90 chromosome 16 open reading frame 90 protein_coding Homo_sapiens

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