C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U2 small nuclear ribonucleoprotein B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000008333 Snrpb2 10090 + 2:143063039-143072853 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000008477 Snrpb2-001 143063039-143072853 protein_coding
  ENSMUST00000126763 Snrpb2-004 143063131-143069424 protein_coding
  ENSMUST00000127760 Snrpb2-005 143064402-143069424 retained_intron
  ENSMUST00000134091 Snrpb2-003 143068173-143072853 retained_intron
  ENSMUST00000139114 Snrpb2-002 143063061-143065734 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008477ENSMUST00000126763ENSMUST00000127760ENSMUST00000134091ENSMUST00000139114
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008477 3.309±1.75 N/A 7.382±1.43 10.697±3.87 2.160±0.79 1.308±0.75 2.335±0.19 2.713±0.69 6.827±6.25 2.914±0.71 2.282±0.32 8.046±7.36 14.566±7.10 4.815±1.73
ENSMUST00000126763 N/A N/A N/A N/A N/A N/A N/A N/A 0.639±0.00 N/A N/A N/A N/A N/A
ENSMUST00000127760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.301±4.15 15.467±5.18 N/A
ENSMUST00000134091 1.050±0.00 1.307±0.57 N/A 1.078±0.00 1.522±0.21 1.277±0.38 N/A 0.736±0.00 0.702±0.00 0.637±0.00 N/A 2.664±0.92 N/A N/A
ENSMUST00000139114 N/A N/A N/A N/A N/A N/A N/A 1.735±0.00 0.555±0.00 1.725±0.00 N/A 1.488±0.67 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DH CIL_0002DH_0002 CGP 2:143063039-143081713

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005730 IEA nucleolus
GO:0017069 IEA snRNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039424 snrpb2 small nuclear ribonucleoprotein polypeptide B2 protein_coding Danio_rerio
ENSG00000125870 SNRPB2 small nuclear ribonucleoprotein polypeptide B protein_coding Homo_sapiens

Loading